barSeed - Barley Seed Development Database

Probe CUST_31066_PI390587928

Source Contig U35_3420

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31066_PI390587928	Hv_44K_v2	GTATCATGAACTCTAAACTGATACCTGGGAATGGATGAAGTAGTTTAATGGAGTGAAAAA	1415	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371021	2819	2e-23	1350 - 1407	100	58 / 58	plus	ABC07437
MLOC	MLOC_68759.2	1824	2e-23	1482 - 1539	100	58 / 58	plus	ABC07437
MLOC	MLOC_68759.3	1747	2e-23	1467 - 1524	100	58 / 58	plus	ABC07437
JLOC1	JLOC1_45520.1	1706	1e-23	1467 - 1524	100	58 / 58	plus
Harvest21	ABC07437	1487	3e-25	1416 - 1475	100	60 / 60	plus	ABC07437
Harvest35	U35_3420	1487	3e-25	1416 - 1475	100	60 / 60	plus

Contig Sequence (1487 bp)

>U35_3420 1487 Hv_44K_v2
GGCGGCATCTGTCCTTCCTCGCTTCCGGCGCAGACTTGTCGACTTCTCTCTCCGCTGATC
GCTCCCTGCGAGTATTACTTGCCGTACCACACCAGTGAACCCCCGCCCCACTCCACTTCC
GCCTCGCTCCCCAACCTTTCATGGCCGGCAACACCCTCGCCGCCGCGAGATTCTCCGCGG
CCGTTACGCTCCTCCGCACCCGCCGCTCCCCGGTGGTCGCCGTGCCGCTCGCCCCGTCCG
GTCTCCGCCACCACCGCCGCAGCGTCGGCATGGCCGCCGGCGCCGCGCCCTCACCCATTC
CCGCCTCCGATCCGCTTCCCAAGGGTTCTGATCTATTTTTGCGGTCAGTTCTCTCAAACA
TGCAAAAAGTCTATTTGAGTAGGAATCCAACTGCAGAAAAGATTCTGGACCTTGTCCATT
CTTATGATGGGGACAACATTTGTTTTGATCACTTTGCTTTCAGAACATTTGGGGTTGATG
GTTATGGTATAAACTCACTTGCGGAATTTTTTACTGATTTTGGTTACGAGTCTCGTGAAG
AACTAAGGTTTCCAGCAAAAAAACTGAGAGCACTATGGTTTTCCCCTCCCAACAATGATG
GATACTCCAGAACTGGTATATATGGACCTTTGCCAAGAATATTCATTTCTGAACTTCTTG
TAGATGAGCTGAGTGCTCCGAGCCAGGAAATTATACGGAAATACATCAAAACATCAGCTA
ATGGAAATAAATATGCTGTTCTTGCAAGTACATTTGGGGAGCTGACATGGGAAAAGCCTA
CTTATTCTGATTTCCAGGTTCTATCTAGGGAAAGTGAATATGCTGGATGGACTCTTGTTA
ATGGCTATGCACTGAACCATGCCACAGTTTCCACTCATCGCTTAGAGTCAGATATCAGAA
GTATTAGTAAGTTTAACAAATTTGTGGAGAACAACGGATTCAAGTTAAGTACCGAAGGAG
GAATTTTGAAAGTGAGCCCTGACGGTCTCCTCCAGCAAAGCTCAACTGTAGCTGATTCAT
CATTATTTACTTTTGCTGATGGAATCACTGAACCTATTCCACGTTCCTATATTGAATTTG
CTGAACGGCTGCCACTCCCACAGTTCAGAGATTTGCAAGATGAAGAGGTCAAGGAACACC
ACAGGCGCGATGGTTTCGAGGTAGGCAATGCAGACAAGATATTTGAGAGCACTTCAAAGG
ATCAGCTTACCCGAAGGTCTGCATAGGCGGTGTACTCTTGATCGAACATTCTGCAGGTGG
GCCAATGAGCCTCTTGGAAGTGTGTTGAAGGCGTGTGTTGTGTAATTATTGTATATGCCA
TATGCCTTGAAGTGCGCTGAAAATCAGATGCTCAATAAAGACTAGTATTTCCTAATGGCA
TTGCGCTCTCCTATCTGGAATTCAGCTATCTCTATGTATCATGAACTCTAAACTGATACC
TGGGAATGGATGAAGTAGTTTAATGGAGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_3420 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g32680.1	365	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi3g28120.1	367	0.0
Arabidopsis v10	AT1G07040.1	371	4e-134	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in 187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). \| chr1:2161225-2163035 REVERSE LENGTH=371