barSeed - Barley Seed Development Database

Probe CUST_31063_PI390587928

Source Contig U35_3423

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31063_PI390587928	Hv_44K_v2	GAACTGGGTCAAGATCGTAGGCAATCTTGTTTGATCGTTGCTCAGTTGCTCACTAAAAAA	1879	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.070	0.151	1.093	2.124	1.111	1.208
Raw	57.466	203.666	1227.425	3690.527	687.171	806.131

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_48517.2	1726	5e-22	1341 - 1395	100	55 / 55	plus
JLOC1	JLOC1_48517.1	2249	5e-22	1864 - 1918	100	55 / 55	plus
Harvest21	ABC09814	1588	3e-25	1518 - 1577	100	60 / 60	plus	ABC09814
Harvest35	U35_3423	1950	3e-25	1880 - 1939	100	60 / 60	plus

Contig Sequence (1950 bp)

>U35_3423 1950 Hv_44K_v2
TCGAGCACTGTTGGCCTACCTTCTTCGTCTCCGTCCCGTACCTTTTTCTTCTCTGGCAAG
CCTGTGCCTGTGCCTGTGCCTGCGCCTGTGCCTGCGCGCCTCTCTCACTGTTTTGGGTTT
CGTCTCCCGCTCTTTCTTTCTCTTCCCCTTCTCCGGCCAAGTGCTGGAACCAAGAAAGGG
CCATGGGAGCGGCGGCGGTGGCGGAGGAGCAGGAGCAGTAGCCGGAGGGAGGGATGGGGT
GGGCTTCAAGGTGGCTTCGCGGGCTGCTTGGCGGCGGCGAGAAGGCCGGCCCCGTCTCCG
GCGACCACAAGCCGGAGAGGGAGAAGAAGCGCTGGGGCTTCGGCAAGTCCTTCCGGGAGA
AGGACCCGGTGCGGCCGCCGACGCCTCCGGTGCAGCGGGCGGCGACGCCCCGCCGCACCT
ACGCGGCGTCGGATGACGGCGGCGACGAGCAGAACAAGCGCGCTATTGCCGTGGCGGCGG
CGACGGCGGCGGTGGCCGAGGCCGCCGTTGCCGCGGCGCAGGCGGCCGCCGCCGTTGTGC
GGCTGACCAGCAGCGGGCGGTGCCCGCCGGCCGGGGCGAAGCACGAGGAGTGGGCGGCCG
TGCGGATCCAGGCCGCTTTCCGTGGCTACCTGGCGAGGCGGGCACTGAAGGCGCTCCGCG
GGCTGGTGAAGCTGCAGGCGCTCGTCCGCGGCAACATCGTCCGGCGGCAGGCGGCTGAGA
CGCTCCGGTGCATGCAGGCGCTCGTCAGCGTGCAGTCCCGCGCGCGCGCCAGCCGCGCCA
CCCGCTCCCGCCAGGCCGCGGCACACCCGGGGGCGACGACGCCGGAGAAGTACGAGCAGG
CGGCATATGATGGCCCGCTCAGGCACGGCCGTTCCGGCTCACTCAAGGGAGGCTCGTCGA
AGACACCGGGCAGCGAGAGGATGAGCAGGGAGAGGTCAGAATCCTGCGGGAGGAACTGGC
TGGACCGGTGGGTGGAGGAGAGGTACATGGATGACGAGAAGAACGCCAAGATTCTCGAGG
TGGACCCCGGCAAGCCCGGCCGGCACGCGGCTTCCAAGAGGCGGGGCAGCGGCGGCGGCC
ACCACCACCAGTCGTCGTGCTCGACCCGGACATCGGAGCAGAACAGCCGGAGCTACGCGA
CGATGCCGGACTCGCCGTCCCGGGACTCGACGACGGCACAGCAGTCCGTGCCGAGCCCGT
CCTCCGTGGGCATGGGCATGGGCGCGGGGGAGGCGCTGAGCCCGCTGCGCATGCCGGCGG
ACACGGCGGCGGAGCTGTACGAGAGCCCGCAGTTCTTCTCGGCGACGTCGCGGCCGGGGA
GCTCGAAGCGGGGCGCCTTCTTCACGCCGACCAAGAGCGAGTGCGCGCGCAGCCTCTTCG
GCGGCTACTCCGACTACCCCAACTACATGTCCAACACAGAGTCGTTCCGGGCCAAGGCGC
GGTCGCAGAGCGCGCCCAAGCAGCGCCCGCTGTACGAGAAGTCCGGCTCGCTCCGGAAGG
CGTCGGCGCACGCGTTCGCGCCGGGGGCGGCGGGGCAGAGGTCGTCGTCGTCCCTGCACG
CCAAGTTCACCAACAAGGCCTACCCTGGCTCCGGCAGGCTGGACCGGCTCGGCATGCCCG
TCAAGTACTGAACCCTGCCGCCATGTGACCACTGTTTGACAACATGGTCGCCGGCTGCTC
AGTAAAGTTAGTGGCGGCAGTTTGTTAGGCTTGAGCTTTTGTGTTGCTATTACCGTGCAG
AGTGCTCCCGGATCAGATCAGCGTTGACAACAGGAGTACTTGCTACTTTGCTCTTGTTGA
CTGGTTAAGTGTAAGTTGCTACTACTTAAGTGTTCCCGCCAAAAAAAAGAGTGTAAGTTG
CTGTATGAGCGTGTCATGTGAACTGGGTCAAGATCGTAGGCAATCTTGTTTGATCGTTGC
TCAGTTGCTCACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3423 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g48160.1	465	1e-177	protein\|IQ calmodulin-binding motif family protein, putative, expressed
Brachypodium v1_2	Bradi5g18767.1	452	0.0
Arabidopsis v10	None