barSeed - Barley Seed Development Database

Probe CUST_31059_PI390587928

Source Contig U35_3427

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31059_PI390587928	Hv_44K_v2	GCATGTCAAATTCAGCTGTGGGCTAGACACATAAAGTTTCCACAGTTGTGGTAATTTTTT	1193	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.050	0.246	0.692	1.872	1.476	1.607
Raw	3.227	41.896	98.302	386.803	114.905	134.817

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57363.1	1900	7e-23	1839 - 1898	98	59 / 60	plus	ABC08085
JLOC1	JLOC1_37165.1	1921	4e-23	1849 - 1908	98	59 / 60	plus
Harvest21	ABC08085	1290	1e-23	1194 - 1253	98	59 / 60	plus	ABC08085
Harvest35	U35_3427	1290	3e-25	1194 - 1253	100	60 / 60	plus

Contig Sequence (1290 bp)

>U35_3427 1290 Hv_44K_v2
ATATGCAGTATCGACGCCTCGGATGGCGCAGGGTTCGTCCCTTATCAGTCCTTCTATCTT
GGTGGGGGAGGAAGACAGACGTCAGTGCTGGCCGGCTTCGAGCCAAAGATTCTTGTCACC
GCTCTCAACACAACTTACGACGAATTGGAAAGAATATTACCCGTGAAACCTCGGGGCCCT
TTCGTGTCCTACACAACGGAGAGCGGTGGCAAAGAACATGGACAGGGAGACAAGCGTGAT
GTGGGTGAAAATGGAAGGGGGAGCGAGCCATGGAGACCAGTGGGGAAGGGCGGCGACGAG
GAAGACGGTAGCGGGCAATCCACTTGGACTTGGTCGTGGAGGAAGCTGATGGGCAGGTTC
ATCGGAGGGGCCTCATCCAGTGCCGCCGCCCCAGCGCAGCCGAACAAGAAGTCGGACAAG
ACTGTGCGCGCGCCGGAGCCCTACAACCTGTTCGACCATGAGCCCAGCTTCCGGAACACC
TACGGTTGGAGTATCTCCGTCGACAAGCACGACTACGAGCCCTTGGACCGCTCAGACATC
GGCGTCTATCTCGTCAACCTCACCGCCGGCTCGATGATGGCGCCACACGTGAACCCGAGG
GCGGCGGAGTACGGCGTGGTGCTCGGCGGGGAAGGCATCATCCAGGTGGTCTTCCCCAAC
GGGTCCCTTGCGATGAGCGCGCAGGTGCGTGCCGGCGACGTGTTCCGGATCCCACGCTAC
TTCCCGTTCGTCCAGGTAGCGTCGCGGGGTGGGCCGTTCGTGTTCTTCGGGTTCACCACG
TCGGCGCTGCGGAACAAGCCTCAGTTCCTGGTCGGCCCCACCTCTGTCCTCCGCGTGATT
CTCGGGCCGGAGCTCGCGGCCGGGTTGGGCGTCCCTTTGAAGGAATTGAGGGAGGTGGTG
GAGGCCCAGAAGGTGGCGGTGATAGAGCCATCGTTGCCGGACAAGGAGAAGGAGAAAGAG
AGGGAACCGTTTGTTATGAATCAAGTGTCGAGGGAGTAAGCTCATGCGGCCAAGTCGTCT
GCTTAATGGTTTATTGGGCGGATGATCGATCATACACATGTGTTCTTCTGGTCGGAACTT
GTGTACATCATGTGCGTGTTTGTTTGCGCCCGTGTGTTTCGGTCGCTAGCGCGTGTGTTG
TGTGTTCTACGTGTTTGTTCGTGTGAGTTCCGGCGTCGTTAATAAATAAAGATGCATGTC
AAATTCAGCTGTGGGCTAGACACATAAAGTTTCCACAGTTGTGGTAATTTTTTTCATATA
CACGCGCATATATTCATTATTCAAAAAAAA

Homology of Contig U35_3427 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g21790.1	566	6e-130	protein\|cupin domain containing protein, expressed
Brachypodium v1_2	Bradi1g63180.1	496	3e-154
Arabidopsis v10	AT2G28490.1	511	2e-78	RmlC-like cupins superfamily protein \| chr2:12178812-12180983 REVERSE LENGTH=511