barSeed - Barley Seed Development Database

Probe CUST_31051_PI390587928

Source Contig U35_3436

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31051_PI390587928	Hv_44K_v2	TGTTTGCCAATAATCTGCTGCACTGTGCAACTCCAATGCGTTATATTTTATCATTGGTAG	1375	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.090	4.717	1.364	0.687	0.250	0.314
Raw	774.027	1185.790	284.006	246.674	28.795	40.120

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77257.1	1490	2e-24	1383 - 1442	100	60 / 60	plus	ABC17178
JLOC1	JLOC1_51521.1	1829	8e-25	1399 - 1458	100	60 / 60	plus
Harvest35	U35_3436	1513	3e-25	1376 - 1435	100	60 / 60	plus

Contig Sequence (1513 bp)

>U35_3436 1513 Hv_44K_v2
CTCTGCCTCACTCTCCACCACCAGAGCAAGCACGCGTTTGGTACAGCACAGACACAGGAA
CATCAACCAACCATGGCTGCGCCGCTGGCCGAGCGCTCGTTCGACGTCATCGTGGTGGGC
GCGGGTATCATCGGCAGCTGTGCGGCGCACGCGGCGGCGTCCCGGGGCGCGAGAGTGCTC
CTGCTCGAGCGCTTCGACCTGCTGCACCAGCGCGGCTCGTCGCACGGCGAGTCCCGCACC
ACCCGCCCCACCTACACGCGGCCGCAGTACCCGCCCATGGTCCGGCTCGCGCACCGCCTC
TGGCACGACGCCGAGCGCGACGCCGGCTACACCGTGCTCACGCCCACCCCGCACCTCGAC
CTGGGGCCCCGAGACGGGCCGGCCTTCGTCGCCGCCATCGCCAACGGCGGCGCCAGCGAG
CTCGCCCCGGCAGGGGACGCATCGCGGCCAGCGTGGGCGGATGCCTTCAGGGTGCCGGAG
GGGTGGGCCGCGGCGACCAGCGGGCCGGCCGGTGTGATAAAGGCGACCAAGGCGATGGCC
ATGTTCCAAACGCTCGCCGCCAAGATGGGCGCCGTCGTGAGGGACAGGGCGGAGGTGGTA
GACGTCGCCAGGCAAGAAGGAAACACGATCGTGGTGAAGACATCAAGCGGGGAGGAGTTC
CACGGCGGCAAGTGCATCATCACGGTGGGCGCGTGGGCGAGCAAGCTGGTGAAGTCGGTC
ACCGGCGCCGACCTGCCGGTGCAGCCGGTGCACACCCTCGTCTGCTACTGGAGGGTCAAG
CCCGGGCACGAGGAGGAGCTGACGACGGAGGCCGGCTTCCCGACGTTCGCCACCTACGGC
GACCCGGGCTTCTACGGCACGCCGTCGATGGAGTACCCGGGCCTGATCAAGATCTGCAGG
AACGGCGGGCCGCCGTGCGACCCGGACGGCAGGGACTGGGCCACCGGCAGTGGCGCGGGC
GGGATCGCCGAGATCGTTGCGCGGTGGATCGACGAGTTCATGCCGGGCCACGTCGACACC
GCCGGCGGGCCGGTGCTCCGGCAGCCGTGCATGTGCTGCATGACGCCCGACGAGGACTTC
GTGATCGACTTCCTGGGCGGGGAGCAGTTCGGGAAGGACGTGGTGGTCGGCGCCGGGTTC
TCCGGCCACGGGTTCAAGATGGGCCCGGCCGTGGGGAAGATCCTCGCCGAGCTGGCGCTG
GACGGCCAGTCGGGGACGGCGGCGGAGGCCGGCTTGGAGCTCGAGCACTACCGGATCGGA
CGGTTCGAGGGCAATCCGATGGGGAACGCCACGAGTCACTGACGTGGGAAATGGCCGTCG
TTCACGTCACCTTCACCGTGGCTGTGTCTGACCACCGCGATTGCCAATTGGTCTGTGTTT
GCCAATAATCTGCTGCACTGTGCAACTCCAATGCGTTATATTTTATCATTGGTAGAAATA
TTTTTAAAAAAAAAAAAAAAAGCCTGAGTGGCATGTGCGAATCAAAAAAAAAACCCCAAA
AAAAAAAAAAAAA

Homology of Contig U35_3436 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32290.2	417	0.0	protein\|FAD dependent oxidoreductase domain containing protein, expressed
Brachypodium v1_2	Bradi4g34200.1	421	0.0
Arabidopsis v10	AT2G24580.1	416	1e-110	FAD-dependent oxidoreductase family protein \| chr2:10444928-10446178 REVERSE LENGTH=416