barSeed - Barley Seed Development Database

Probe CUST_3104_PI390587928

Source Contig U35_6590

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3104_PI390587928	Hv_44K_v2	GCAAGTAGAAAGATGGATATATCATCTGTCGAATTATTGCCAACAAACGTCACTGTACTT	1212	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.280	1.692	1.259	0.853	0.338	0.411
Raw	1668.193	3548.876	2219.977	2390.351	328.028	438.078

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_24637.2	591	7e-23	9 - 68	98	59 / 60	minus	None
MLOC	MLOC_24637.1	550	7e-23	44 - 103	98	59 / 60	minus	None
JLOC1	JLOC1_16924.2	644	4e-23	475 - 534	98	59 / 60	plus
JLOC1	JLOC1_16924.1	908	4e-23	739 - 798	98	59 / 60	plus
Harvest35	U35_6590	1359	3e-25	1213 - 1272	100	60 / 60	plus

Contig Sequence (1359 bp)

>U35_6590 1359 Hv_44K_v2
GCGCCCTCCCGCATCTCCCTCCTCCGCTCCCTCCCGCTCCGCCTCCGCCTCGCCATTCCC
CGCCCCCGCCCCCGCCTCCCCACCCTCCCCCTCGCCCTACCCTCCTACTCCGACGGTAAC
AACAACAACAACGACGGTAACAACAACAGCGGCGGCGGGAGCGGCGGCGGGGATGACGAA
GCAGGGGACAGCGGCGGCGAGTGGGGCGGGCAGCGGGGGGAGGCGCTGTTCGTGCTGGCG
CAGGCGGGGAGGAAGCTCTCCAGCCTGCCGGCCGACCTGGCCGCGGCAGTCGAGGGCGGC
CGCGTCACGGCCGACATCGTGCGGCGCTTCGCCGAGATGGACGCCTCGCCGCTGCTCCGC
TGGCTGCTGCGCTTCAGAGGCTTCAGGGAGCGCCTCCTCGCCGACGACCTCTTCCTCGCC
AAGCTCGCCATGGAGATGGGCGTCGGCATGATCGCAAAGACCGCTGCGGAGTATGAGAAG
AGACGGGAGAACTTCGTCAAGGAGATTGACATCGTCATCGCTGATGTGGTCATGGCAATA
GTTGCAGATTTCATGCTTGTATATCTTCCAGCACCAACTGTCTCTCTGCAGCCACCACTT
GCAAGAAATGCTGGACTTATCACTAGTTTTTTCCACAACTGCCCAGACAATGCTTTCCAA
ATTGCTTTGGCTGGGAGATCATTCTCGATTCTGCAGAGGCTAGGAGCTATTGTGAGAAAT
GGTGCAAAGCTTTTCGCAGTTGGAACTGGCGCTTCTCTGGTTGGTACTGGTGTCACCAAT
GCACTGATCAAAGCAAGGAAGGCTGTTGACAAGGACCTTGACGACGAAATTGACGATATT
CCAGTTGTGTCAACTAGTATTGCCTATGGTATATACATGGCTGTTTCTAGTAACCTCAGG
TACCAGATTTTGTCTGGTGTAATCGAGCAGAGGATGCTGGAGCCCGTGCTACATAACCAC
AAGCTGCTGCTGAGTGCACTCTGCTTTGCCGTCCGGACAGGGAACACATTCTTGGGTTCT
TTACTATGGGTGGACTATGCGAGGATGGTAGGCGTTCAAAAGGCCGAAGAGGAGATCTGA
AGTTCGAGCCTTTTTGTTACTGATATATACCGGAATTTAGATGCCGGCTACATATCTTGC
CTGCGCCCTAGAATGTTATTCTTCTCTTCATAGGGAATTCTGCGCGGCAGAGTTCACTTT
ATTTTCAGGAAAGCAAGTAGAAAGATGGATATATCATCTGTCGAATTATTGCCAACAAAC
GTCACTGTACTTGTCTTACATATCTTGCAACTTGCAAGGCCATATAGAGTGAGATGTTGC
TCCTTGGAGCATTTCAGTTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6590 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g72710.1	390	1e-131	protein\|expressed protein
Brachypodium v1_2	Bradi2g61270.1	388	1e-135
Arabidopsis v10	AT5G12470.1	386	2e-109	Protein of unknown function (DUF3411) \| chr5:4044950-4047290 REVERSE LENGTH=386