barSeed - Barley Seed Development Database

Probe CUST_31045_PI390587928

Source Contig U35_3442

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31045_PI390587928	Hv_44K_v2	TCGAAGCGATTTCGCCTACCCGTCAAACCAAACGAGCCCATCAGTTTTTTGGGTAAAAAA	1280	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.770	2.420	1.286	0.786	0.294	0.307
Raw	3442.450	4704.280	2233.843	2156.933	278.782	317.290

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_3442	1351	3e-25	1281 - 1340	100	60 / 60	plus

Contig Sequence (1351 bp)

>U35_3442 1351 Hv_44K_v2
CCCTAACGCTTAAACCCATCCCCGCGCACAACCTTCAACGGCGGCGGCGAAGGCGAAGGC
GATGGCGAGGGAGGACAGGAAGCGGAGGCAGCCCGACGGCGACGAGGCGGCGGACGATGG
CGATAGGCGGGGGCGGAGGGACAAGAGGCCCAAGGAGGAGAAGCCGGCGCCGCCGCTGCC
GTCGGAGATCAGGAACAAGGAGAAGCGCAGCGAGGTGTACGCCAAGCTCAAGCGCGAGAA
GAAGGCCCAGAAGCGCAGGCTCGGCCGCGAGCGCGGCCAGGCCGCCCAGCGCGCCGCCGA
GCTCGGCGAGGAGGTGCCGGAGAAGCAGGTGCCCCGGACGATCGAGAACACCAGGGAGCC
CGACGAGACCGTCTGCCGGCCTGACGACCAGGAGCTGTTTGCAGGGAATGATGCTGATGA
ATTCAATGCAGTGCTTAAACAAGTAGTAACCCCGAAAGTATTGATTACCACGTGTCGCTT
CAATTCAGGCAGGGGACCTGCTTTTATCAAGGAGTTAATGCAAGTGATTCCAAATGCTCA
ATATGTTAATAGAGGAACTTATGACCTCAAGAAAATTGTGGAATATGCAAATAACAGAGA
GTTCACTTCAGTCATGGTTGTCCACACAAATCGAAGGGAACCTGATGCGCTGCTGATCAT
CAACCTACCTGAGGGCCCTACTGCACATTTTAAGCTATCCAAGCTCGTTCTGCGGAAGGA
TATAAAGAACCATGGGAACCCTACAAGTCATAAGCCAGAGTTGGTGTTGAACAATTTCAC
TACGCGCCTTGGTCATCGTGTTGGGAGGATGATACAATCTCTTTTCCCTCAAGACCCAAA
TTTCCGCGGCCGACGAGTTGTGACCTTCCATAACCAGCGAGACTATATATTTTTTCGTCA
TCACAGGTACATCTTTGAGGAGAAAGAAAAGAAAATTGTTTCGAAGGACAAGAAATCGAA
GGGTGAAACCAAAACTGAGAAGCAAGTGAACTGTCGCCTTCAGGAATGTGGCCCTCGCTT
CACTCTGAAGCTGCAAACCTTGCAACACGGGACCTTCGACACGAAAAGCGGGGAGTACGA
GTGGGTTCACAAGCCCGACCTGGACACGAGCAGGAGAAGGTTTTTCCTGTGATTTTGCGC
TTCACCCACACAAAGTTCTATCTCTGTTCCGTTTCGTTCCCCGGGAAATTTACTTGTTGT
AGAGTAGTAGTATTATCATGCTCGAGTCCTTGGACAGTGTAACAACAAGGCGCGCGACAT
ACCCGAATCGAACCCCTGATTCGAAGCGATTTCGCCTACCCGTCAAACCAAACGAGCCCA
TCAGTTTTTTGGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3442 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g04600.2	361	8e-180	protein\|Brix domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g51480.1	362	0.0
Arabidopsis v10	AT4G01560.1	343	6e-155	\| Symbols: MEE49 \| Ribosomal RNA processing Brix domain protein \| chr4:677266-679164 REVERSE LENGTH=343