- Probe CUST_3103_PI390587928
- Source Contig U35_6591
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3103_PI390587928 | Hv_44K_v2 | AGGGCGGCCGCGTCACAGGCGACATCGTGCGGCGCTTCGCCGAGATGGACGCCTCGCCGC | 298 | GeneList: white MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.113 | 1.560 | 1.805 | 1.632 | 0.553 | 0.421 |
| Raw | 16.519 | 36.154 | 36.648 | 56.813 | 4.618 | 3.129 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_18951.2 | 352 | 2e-24 | 112 - 171 | 100 | 60 / 60 | plus | ABC08699 |
| MLOC | MLOC_18951.1 | 910 | 2e-24 | 120 - 179 | 100 | 60 / 60 | plus | ABC08699 |
| JLOC1 | JLOC1_13129.1 | 866 | 8e-25 | 120 - 179 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC14262 | 356 | 4e-24 | 299 - 356 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC14261 | 1180 | 6e-22 | 293 - 352 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_6591 | 358 | 3e-25 | 299 - 358 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_6590 | 1359 | 6e-22 | 293 - 352 | 97 | 58 / 60 | plus |
Contig Sequence (358 bp)
>U35_6591 358 Hv_44K_v2 CACCTCGGCCAGCTCCACCTCCACGCGCCCTCCCGCATCTCCCTCCTCCGCTCCCTCCCG CTCCGCCTCCGCCTCGCCATTCCCCGCCCCCGCCTCCCCACCCTCCCCCTCGCCCTACCC TCCTACTCCGACGGTAACAACAACAACAACGACAACAACGGTGGCGGCGGCGCAGGGGAT GACGAAGCAGGGGACAGCGGCGGCGAGTGGGGCGGGCAGCGGGGGGAGGCGCTGTTCGTG CTGGCGCAGGCGGGGAGGAAGCTCTCCAGCCTGCCGGCCGACCTGGCCGCGGCAGTCGAG GGCGGCCGCGTCACAGGCGACATCGTGCGGCGCTTCGCCGAGATGGACGCCTCGCCGC
Homology of Contig U35_6591 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |