- Probe CUST_31020_PI390587928
- Source Contig U35_3467
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31020_PI390587928 | Hv_44K_v2 | ACTTGTCGTCGGCTGGGGATCGATCCATCTGTTGCAACAAGTTGATTTGCGACTAAAAAA | 507 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.046 | 0.127 | 0.864 | 1.425 | 1.062 | 1.342 |
| Raw | 56.167 | 259.867 | 1500.874 | 3756.510 | 1001.133 | 1378.230 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_47898.1 | 1212 | 3e-21 | 481 - 534 | 100 | 54 / 54 | minus | ABC08535 |
| JLOC1 | JLOC1_30825.1 | 1266 | 2e-21 | 544 - 597 | 100 | 54 / 54 | minus | |
| Harvest21 | ABC08536 | 521 | 3e-25 | 451 - 510 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_3467 | 578 | 3e-25 | 508 - 567 | 100 | 60 / 60 | plus |
Contig Sequence (578 bp)
>U35_3467 578 Hv_44K_v2 CTCGCCTCCTTTCTTTATAGCGCGCCAAGAATCAATCCACTCCCCTCCTTCCTCCTCCCT CCCGAGCCTTCCCGAGCACTCCTGAGATCAGATCGAAGGAAGAAGAAGAAGGAGAAGGCA AGGGAGGATCAGCGGATGGCGGACTGGGGCCCGGTGGTGGTGGGGGTGGTGCTCTTCATC CTGCTCACGCCGGGGCTGCTGTTCGAGATGCCGGGGTCGCACCACCGCGTCGACTTCGGC GGCCTCCACACCAACGGCAAGGCCATCTTCGTCCACACCATCCTCTTCTTCGCCGCCTTC ACCATCCTCACCCTCGCCCTCCACATCCACATCTACGCCGGCTAGATTCATGTACATACT ACTGTACTTCAACTAGCTAGCTATACTTGTGTGCATGTAATGGGTCCGTGCTCGCCAGAT CTGTACTGCTGCTTGCTATCAGTTGAAGAAGCGTATTGAAGCTGCTGCGCTCTGTCTGTT TGTTTATCTCACTGATGTTGTACTCCTACTTGTCGTCGGCTGGGGATCGATCCATCTGTT GCAACAAGTTGATTTGCGACTAAAAAAAAAAAAAAAAA
Homology of Contig U35_3467 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |