barSeed - Barley Seed Development Database

Probe CUST_3101_PI390587928

Source Contig U35_6593

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3101_PI390587928	Hv_44K_v2	TATTCAGAAATGGCATGCCGCTGTGTAATTCTGTAGCTCCTGTACCACCCAAATAGTTTT	573	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360635	1763	2e-24	1644 - 1703	100	60 / 60	plus	ABC15884
MLOC	MLOC_64928.5	560	2e-24	481 - 540	100	60 / 60	plus	ABC15884
MLOC	MLOC_64928.1	1900	2e-24	1716 - 1775	100	60 / 60	plus	ABC15884
MLOC	MLOC_64928.2	1461	2e-24	1277 - 1336	100	60 / 60	plus	ABC15884
MLOC	MLOC_64928.4	1426	2e-24	1244 - 1303	100	60 / 60	plus	ABC15884
JLOC1	JLOC1_42673.2	1478	8e-25	1306 - 1365	100	60 / 60	plus
JLOC1	JLOC1_42673.1	1446	8e-25	1274 - 1333	100	60 / 60	plus
Harvest21	ABC15884	731	3e-25	574 - 633	100	60 / 60	plus	ABC15884
Harvest35	U35_6593	735	3e-25	574 - 633	100	60 / 60	plus

Contig Sequence (735 bp)

>U35_6593 735 Hv_44K_v2
GGAATCTTCCCCTGTTATTGTTGAGGCTGTATCATATTTGACTAAGAAAGTGGATTCGAA
AACAAGAGATGTAAAAGTTCTCCAGCCTACAATAGCCACTCAGTCTGTGCGGACTACTGA
GAGTAATTCGCTCTACGAGATGGATAAAGCAACACAGGAGGTGGTCAGTGCAATTGTGGA
GGCACAGTCTGGTGGTCTTGGGGTTGCCATGAATAAGATTTCTCTTGGGCCCGACTTGCC
AACTATTAATCTTCAAAGATTGGTTGGCCTGCCCGAGCTACGGAGCCTCCGACGCACGTT
CATCAAGCTGGCAGGGCAGTACAGCTTGAGCGGGCGACCCCCACCAACAGATGCTGACAG
CGCGAAGAGGATGTTTGTTGACTACTTGAACCGAGAAATCGGTGGGTGATGGTTGGTTCT
CCCATCTCTGATGAGTAGTCCGGCCTATGATGTACTACTTCCCAGGGGACGGAATGCAGG
CGCTGCTAGCGTTTTCCCCTGCCATGCTCCTCATATGGCTTCCTTCGGGCCGTCCAAAGA
GATTATTTTGCCTCGCATGAGCTTCACCGCAAGTATTCAGAAATGGCATGCCGCTGTGTA
ATTCTGTAGCTCCTGTACCACCCAAATAGTTTTTGCGGGTGCTTGCAACTTGTAAACTAC
AGAATTTGGAAATATTTACTGAATTATTTATGTACGGTTGCAACTCGTTACAACATATTT
TGAAAAGTGGCTCCA

Homology of Contig U35_6593 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi1g03560.1	302	7e-77
Arabidopsis v10	AT1G13870.1	302	1e-55	\| Symbols: DRL1, AtKTI12 \| calmodulin binding;purine nucleotide binding \| chr1:4747437-4748345 REVERSE LENGTH=302