barSeed - Barley Seed Development Database

Probe CUST_31018_PI390587928

Source Contig U35_3469

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31018_PI390587928	Hv_44K_v2	TTGTAGTTCAATACTGGGTGCCGCATTTTTGTTACTCGTGTAATGAGTTTTGGGCATTTT	1198	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.843	7.499	1.591	0.724	0.711	0.633
Raw	38.820	118.401	21.277	14.865	3.461	3.399

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_50174.1	1461	8e-25	1263 - 1322	100	60 / 60	plus
Harvest21	ABC09110	1235	6e-22	1182 - 1235	100	54 / 54	plus	ABC09110
Harvest35	U35_3469	1261	3e-25	1199 - 1258	100	60 / 60	plus

Contig Sequence (1261 bp)

>U35_3469 1261 Hv_44K_v2
AACACGCTCAGAGCTAGCTACCATACAGGCCATCAGGAGCCAGGAGGAAGAAACAACCAG
CGCATATATCCCCCTCTTCCCGGCCAGCTGAGCTACTTGAGCCACCGTTGGACCAACTCG
CCTCAAGAAGACTGAGCACCGCCGCCGCCCGGATCTCTTGTTCATCGCCCTCTCCGCTCT
TGGACTCGCTCGCCGCCGCCGCCGCCATCCATGGCTAAGCAGCAGAAGAACGCGCACGTC
CCGAAGTTCGGCAACTGGGACAACGACGGCAACGTGCCCTACACGCTCTACTTCGACAAC
GCGCGCAAGGGCAAGGGCGGCAAGCCCATGAACCCCAACGACCCCGTCGAGAACCCTGAG
GCCTTCTCCTCCTCCGTCGTCGCGCCGTCGCCGAACCGCTCCTTCGACCAGGCCAGGCCG
GCGCCGGCACTCCCTCCCGCTTCCCCGCCTCCCGCTCACCACCACGAGCGCCGGCCCAGC
GACGGGCCCGCGCCCGCTCCGCCGCTGTCCCCGTACCACCGCAACGCCGGTGGCGAGCCG
CCGAGAAGAGGCGCAGGCGGCGGACGGGCAGGCGGGTACAGCGTGGAGCAGTCGCCGGCA
CCGTCGCCGCTGCACCCGTACGGCCAGTCAAAGGCCGAGCACTCCGACGGCAGCAGATAC
GGCCTCGTGGCCAACGCCAACTCCGTCGACCGGTCCCGTGCCAGGGCCGCCTCCCGCGGC
AACGAAACGCCGACGAGGGGGTCGGCGGTGCCCAAGTTCGGGGACTGGGACTCCAACCCG
GCGTCGGCGGACGGCTACACGCACATTTTCAACAAGGTGAGGGAGGAGAAGAGCACCCAG
GCCAAGGCGCCGGGGTTCGGCAAGGACAACGTCGCCTATGGCAAAGGCGCCAGGCAGCAC
GACGACGGCTACGTCTCCTCGAGTCGCTGGTGCTTTGGGTGGTGCAAGTAGGAAAGGTTC
GACGGATGATGGAGCAAAGTAAGCAGGGATCTTTGGGAATGTAAATTGTGTGGAATTAAG
AAGGTTTTTGCCATTGATTCAACTTCGAACTTGTGTAATCCCATTTCTTGGGACATTATT
TGGCATTGGGCACTGAGCAGAGTTCATATTCTTTTGATTGTCAGTATACTATTTCTTTCT
GATGTGGAATGTAGAGGTCAGCCATGGTTGTTGAAATGCTAGAATTTTCTTACCGGGCTT
GTAGTTCAATACTGGGTGCCGCATTTTTGTTACTCGTGTAATGAGTTTTGGGCATTTTTG
T

Homology of Contig U35_3469 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41470.2	253	8e-69	protein\|proteophosphoglycan ppg4, putative, expressed
Brachypodium v1_2	Bradi3g40950.1	243	3e-86
Arabidopsis v10	None