barSeed - Barley Seed Development Database

Probe CUST_31015_PI390587928

Source Contig U35_3472

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31015_PI390587928	Hv_44K_v2	CACATACACGACGATAGAATGATGTACAGCAACATGATGTATATAATCTATGCCCATATA	1973	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56325.4	2323	2e-24	2246 - 2305	100	60 / 60	plus	ABC08038
MLOC	MLOC_56326.1	9583	2e-24	7188 - 7247	100	60 / 60	plus	ABC04501 ABC08038 ABC16810 ABC34614
MLOC	MLOC_56325.3	3735	2e-24	3644 - 3703	100	60 / 60	plus	ABC08038
MLOC	MLOC_56325.2	6805	2e-24	4077 - 4136	100	60 / 60	plus	ABC04501 ABC08038 ABC16810 ABC34614
JLOC1	JLOC1_36418.6	2982	8e-25	2395 - 2454	100	60 / 60	minus
JLOC1	JLOC1_36418.5	2720	8e-25	2133 - 2192	100	60 / 60	minus
JLOC1	JLOC1_36418.4	2849	8e-25	2262 - 2321	100	60 / 60	minus
JLOC1	JLOC1_36418.3	2799	8e-25	2212 - 2271	100	60 / 60	minus
JLOC1	JLOC1_36418.2	2683	8e-25	2096 - 2155	100	60 / 60	minus
JLOC1	JLOC1_36418.1	2843	8e-25	2256 - 2315	100	60 / 60	minus
JLOC1	JLOC1_36416.1	4776	8e-25	3662 - 3721	100	60 / 60	plus
Harvest21	ABC08036	765	3e-25	50 - 109	100	60 / 60	minus
Harvest35	U35_3472	2082	3e-25	1974 - 2033	100	60 / 60	plus

Contig Sequence (2082 bp)

>U35_3472 2082 Hv_44K_v2
GCACCCGAGCCGTGCAGCTGTTATCCGTGGCTGGTGGCTTCATCTCCCACATCATATCAG
ACCTCATCACCGACAAGATCAAGGAGAACGAAGTGGCGCGCGCGATCGAGCTGAGGGAGA
TCGTCACGTCTCTGGGCCCTGCCTACATCAAGCTCGGCCAGGCGCTCAGCATCCGGCCCG
ACATTCTATCCCCTGCGGCCATGACCGAGCTGCAGAAGCTATGCGACAAGGTCCCTTCGT
TCCCTGACGATATCGCGATGGCTCTCCTGGAAGAAGAGCTTGGACGGCCATGGCAAGACA
TATACTCGGAACTGTCTCCCTCTCCAATCGCTGCAGCATCTCTGGGACAGGTGTACAAAG
GCCGTTTGAAAGAAACTGGAGAACTGGTGGCTGTCAAAGTGCAAAGGCCATTTGTGCTTG
AGACTGTCACCATAGATCTATTCATCATTAGAAATTTGGGGTTGGTCCTCAAGAGATTTC
CACAGGTCGCCCTTGATGTTGTTGGCCTGGTAGATGAGTGGGCTGCCCGATTTTTTGAAG
AACTCGATTATGTCAACGAAGGGGAAAATGGCACCCGCTTCGCTGAAATGATGAGAGAAG
ATCTTCCTCAGGTTGTTGTACCAAAGACGTACCCTGAATATACGTCCAGGAAAGTTCTTA
CCACAGGGTGGGTAGATGGTGAGAAGCTTTCACAGAGTACTGAGGATGATGTTGGGTCGT
TGGTTAATGTTGGTGTTATATGCTATCTAAAACAGTTGCTTGATACTGGATTCTTCCATG
CTGACCCTCATCCTGGAAATATGATTAGGACACCAGATGGAAAGCTTTGTATTCTTGATT
TTGGGCTTGTAACAAAACTGACAGATGATCAGAAGTACGGAATGATTGAAGCAATAGCTC
ACCTTATTCATCGTGATTATGATGCTATCGTGAAGGACTTTGTGAAGCTTGGTTTCATCC
CTGAGGGAGTTAACTTGGACCCAATCTTACCTGTACTGGCTAAAGTTTTTGATCAGGCAC
TTGAAGGCGGTGGTGCGAAGAATATTAACTTTCAAGAGTTGGCAGCGGATCTAGCACAGA
TAACATTTGATTACCCATTCAGGATACCTCCGTATTTTGCTTTGATTATTAGAGCAATCG
GAGTATTAGAAGGTATAGCTTTGGTCGGAGACCCTGAATTTGCCATTGTGGATGAAGCAT
ATCCATACATTGCACAGAGGCTGCTAACGGATGAATCACCTCGACTGAGGAGTGCCTTGC
GTTACACAATATACGGCAAAACAGGTGTTTTCGACGCAGAAAGGTTCATTGACGTTATGC
AAGCTTTCGAGAATTTCATTAGTGCAGCAAAGAGTGGTGGAGGGGAGGACATGAAGGGAA
ACATGGCAGAGCTGGGTGCTATAGGATTCCAACCTAGCACCAGTTTAGTTCCTGCATTCC
CAATGGCCATTTCCCAACCTGAAAATCCAATCAAAGCTCGGGCTGCTCTCTCTTTTCTAC
TCTCTGACAGGGGTGACTTCTTCCGGGAGTTCATTCTTGATGAGATTGTGAAAGCCATCG
ACGCGGTTTCAAGGGAGCAATTGCTACAAATTGCTTCATCTTTTGGGGTCAGAAATCCCG
TCCCGGTTTTCGGCATGGTTCCTGTGAGGTCGGGAGCATTGCTTCCTACAATCACAGAGG
AAGACAGGATCATCTTGAACAATGTCGAGAAGGTCGCCAAGTTTCTGACGGCTGGGACGG
CAAATCAAACAGTCAACGGGGACGTAAATGTCGTGTCTCTGGTGCAAGAGCTTTTACCTG
TGCTACCAAGCATCTCATCGAAGATCCTACCAGATGTCTTGAGCCGGTTGTCATCACGGG
TATTCGCACGGGTGATCCGGGAAGCATTTTTGTGAAGTGATCTCAGTTTTGTTTTCCTTC
TGACAGGAAATTAGAGACTTATTTCTCCTTTTTCCTTTTATACAAACTACACACACATAC
ACGACGATAGAATGATGTACAGCAACATGATGTATATAATCTATGCCCATATATATATAT
GCAGATTAACCAATGTTTAACCAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3472 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g57160.1	785	protein\| ELMO/CED-12 family protein, putative, expressed
Brachypodium v1_2	Bradi3g55317.1	793
Arabidopsis v10	AT3G24190.1	793	Protein kinase superfamily protein \| chr3:8743319-8747703 FORWARD LENGTH=793