barSeed - Barley Seed Development Database

Probe CUST_31014_PI390587928

Source Contig U35_3473

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31014_PI390587928	Hv_44K_v2	CATACGTATACATTTGACATCTGGGCTCAGTTAATTCCACAAGACAATCATCAATCTAAA	793	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.005	6.471	1.352	0.824	0.901	0.802
Raw	69.279	79.350	13.851	13.608	2.825	3.260

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61703.1	1629	7e-23	969 - 1025	100	57 / 57	minus	ABC08541
MLOC	MLOC_61702.1	3867	7e-23	2903 - 2959	100	57 / 57	minus	ABC08541 ABC16501
JLOC1	JLOC1_40333.1	4033	4e-23	664 - 720	100	57 / 57	plus
JLOC1	JLOC1_40332.1	2970	4e-23	2874 - 2930	100	57 / 57	minus
Harvest21	ABC08541	921	3e-25	794 - 853	100	60 / 60	plus	ABC08541
Harvest35	U35_3473	921	3e-25	794 - 853	100	60 / 60	plus

Contig Sequence (921 bp)

>U35_3473 921 Hv_44K_v2
AACCCACACACACAGACACAGGCACACACTGACACGCAGGCAGCAGCGGCAGCGGAACTA
AGCATGTGGTCGGGAGCGGCAGCCGCGGTGGCGGCGCGCAGCGTCTCCCCGCCGCTGCAC
GCGCCGACGTCCCTCACCGGGCGGCGCGGCGCGGGACGGCCGTCGACGGTGTCGGTGCGC
GCTGGCGGCGGGCTGATGGACTTCGTGGGCGGGGACCTGGTGAAGCCGGACCTGGGGCGG
TGGCTGGACGACGTGGAGAAGCACAAGGCGCTGGCCATCTACCCGCCGCACGAGGGCGGC
TACGAGGGCCGCTACCTCAACCGCCTCCGCTACCAGGGCTACTACTTCCTCGACCTCTCC
GCGCGCGGCCTCGGCGACCCCGAGTCCACCCTCACCAAGATCCACCCCGTCTGCCCGCCT
AGCCTCGGGAGGCAGCCGGTGGCGAGGTGGTACTTCCCGCCGGAGGTGGACTACAGGCTC
AGCCTGCTGCACCCGGACGCCAAAGGGCTCATCGTCTGGGTCTACGAGGCCAAGGTTCTG
TCCAAGGCCGAGCTGCAGTTCCTGGCCATGCTCCCCGACCTCCGCCCCAAAGTCAGGGTG
ATCGCGGAATGCGGCAACTGGAGAAAATTCATCTGGAAACCGCTGAAGCAAATATCGGGC
CTCGAGCCTGACCCGGACGCCGAGGAATGAGGAGCCACCGTCCGGCCGGCAGCTGCCTCG
TCTCATCTCTCGCCTTACACTCCATTTTCAGCTTCTTCTTTTTTGTGTACTACTAAAGGA
GGACAATGATGTACATACGTATACATTTGACATCTGGGCTCAGTTAATTCCACAAGACAA
TCATCAATCTAAAAAAAAAAAAAAACATACACATATCCAACAAATCAAATCATATATGCA
AGCTCAAAAAAAAAAAAAAAA

Homology of Contig U35_3473 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66000.1	212	4e-117	protein\|NADH dehydrogenase I subunit N, putative, expressed
Brachypodium v1_2	Bradi2g56960.1	211	5e-127
Arabidopsis v10	AT5G58260.1	209	2e-90	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor \| chr5:23561075-23561929 REVERSE LENGTH=209