barSeed - Barley Seed Development Database

Probe CUST_31013_PI390587928

Source Contig U35_3474

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31013_PI390587928	Hv_44K_v2	TCCTCTGAAATTCTTCAGTGTTTTTTCTCCTGCTAGCTACTGAGATTGATGACCGTCAAA	2028	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.390	1.828	1.546	1.065	0.446	0.424
Raw	69.244	145.655	104.767	110.916	16.677	16.884

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC08590	2102	3e-25	2029 - 2088	100	60 / 60	plus	ABC08590
Harvest35	U35_3474	2102	3e-25	2029 - 2088	100	60 / 60	plus

Contig Sequence (2102 bp)

>U35_3474 2102 Hv_44K_v2
GAAACGGAGGGAGGGTTCTCGATCCGTTCTTGAGCCGATTCTTTTGATTTCCTGAGCCGC
GGAAGCGGGGAAGCTTTGGATCTCGAGGCCACCCGAGCGTGAACCCTCGGTTTCTCCGGG
CCCTCCTCGCTGCATTGCCTCCTCCCCAGATCCGGACTGCCGGGCGAGGAAGCGCCGGGT
CCTCGCCCTCGCCGCCCACCTCAAATTCGCCCGGAAATTCCAGCTTCTTTAGCTGTCTCC
GGAGCCCCGCGCTTCAGATCTTTCTCGAAATGTCCATTATTTTGGTTGGGTTGGACGCGG
TGGTGGCGGCGACTACTTTATGAGCTGTCTCCTGCCATTTTTGGAGTAGATTCACCCGCA
ATGGCGGATCTTGCCATGGAGCTGTAAAGGGGGGCTCTTTCCGCGAGAGCGACAGCAGCT
GGTCATAAGTTGCAATGTCTTTGAAGAGCATCGTGCGGGAGCTCAAGGAGATGAGGGACG
GCATCGGGAGCATGTCCAGGCGCGGCGGCGTCTCCGACGGGCGCGCCGGCCACGGCCGCG
GGGGGTCGCGGCATTCCTGGCCCAGCCTGTGGCCGGAGCCGCAGCCGCAGCCACAGCGGC
CAGGCCAGGAGCCGCAGCAGCAGGGGCAGTGGGCGAACCTGCCGCCGGAGCTGCTGATCG
ACGTGATACAGAGGGTGGAGTCCAGCGAGGTGGCCTGGCCGGCGCGGCGCTATGTCGTGG
CCTGCGCAGCCGTCTGCCGGACGTGGCGCGAGGTCACCAAGGATGTGGTGAAGACCCTCG
AGGAGTGCAGCAGGATCACCTTCCCCATCTCCCTAAAGCAGCCGGGGCCTCGTGATTGTC
CCGTGCAGTGCTTTGTGAGGAGGGACAGGGCGACGTCCACCTATCTCCTCTACCTGGGGC
TCAGCCCATCTCTGCATGGGGAAAATGACAAGCTTTTGCTTGCAGCCCGCAAGATCAGAC
GTGCAGCTAGGACTTCTTTTGTGATATCGCTTATCTCTGATGATTTTTCTCATTCGAGCA
GCACCTACGTTGGCAAACTGAAACCAAACTTCCTTGGCACAAAGTTCACAATATTCGATA
GCCAACCTCCTTGTGATGCTGCGGTGCTGCCTAACAACAAGCCAAGCAAAAGGCACTCGA
AGCAAGTGTCACCAAGACTGCCGCTAGGCAATTACAATGTTGCTACCGTCTCATATGAGC
TCACTGTCCTGCGCAACCGAGGACCAAGGAGAATGCAGTGCACCATGCACTCAATACCAG
CCGTGTGCATTCAGGAAGGCGGCAAGGCCCCGACCCCTACTGGCATGGTACACTCACTCG
ACGAACAAGTGTCCACCTTATCAACCAGTAGTAAAGGAAAGGAACCGAACATCGAATTCT
CCTCAACAAGCCTCACAGCTGATTTATCAGGACCGATCTCTACTAGCGAAGCACCTCTGC
TTCTGAAGAATAAAGCTCCCCGCTGGCATGAGCAGCTGCAGTGCTGGTGCCTCAACTTCC
GAGGGCGTGTCACCGTAGCATCGGTCAAGAACTTCCAGCTCGTCGCCTCGGTCGACCCCT
CCCTTGGTGTCCCCGCGGCGGAGCAAGAGAAGGTGATCCTCCAGTTCGGGAAGATCGGGA
AGGACATATTCACAATGGATTATAGGTACCCATTGTCGGCGTTCCAGGCCTTTGCGATCT
GCCTGACTAGCTTCGACACCAAACCGGCCTGCGAATGACCGAAGAAGGCGGCGTTAACCG
GGCCAGCCAGCTTGAGACATTACCTGCCCCTTGGATGGTGTAAATTCTGATATCTTTGCT
TCAATTCTCGGACGCTGCCCCTGGGGAGATGGATGGTAGGTGGTAGATTGATGATAGTTT
TGCCGGATCAAGATGTGGGAGCAATGATATCTCCGTATCTTGGCAAACCCCCCAGGAAGA
TTTGGGCGAACTGTTGTAAGCGACTGCTATGTATTATTGTTGTTGTTGTTGGAATGTTTA
GCAGTGACATATCACTGCCTTTATGGACATTGTTCATCTCGCCTGCTCTCCTCTGAAATT
CTTCAGTGTTTTTTCTCCTGCTAGCTACTGAGATTGATGACCGTCAAAAAAAAAAAAAAA
AA

Homology of Contig U35_3474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47640.1	429	0.0	protein\|OsFBT4 - F-box and tubby domain containing protein, expressed
Brachypodium v1_2	Bradi3g52767.1	429	0.0
Arabidopsis v10	AT2G18280.1	394	7e-124	\| Symbols: AtTLP2, TLP2 \| tubby like protein 2 \| chr2:7946754-7948176 FORWARD LENGTH=394