barSeed - Barley Seed Development Database

Probe CUST_31010_PI390587928

Source Contig U35_3477

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31010_PI390587928	Hv_44K_v2	GGGGGCTATTACTCCCTCCGTTTTTATGTACTCTATTTAGCTTTGCCTTCAATTAAATTT	1577	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.369	1.589	1.176	0.905	0.458	0.521
Raw	94.513	167.707	110.294	127.521	23.071	29.069

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_28940.3	2222	8e-25	2158 - 2217	100	60 / 60	plus
JLOC1	JLOC1_28940.2	1882	8e-25	1818 - 1877	100	60 / 60	plus
JLOC1	JLOC1_28940.1	1873	8e-25	1809 - 1868	100	60 / 60	plus
Harvest21	ABC09605	1685	3e-25	1578 - 1637	100	60 / 60	plus	ABC09605
Harvest35	U35_3477	1685	3e-25	1578 - 1637	100	60 / 60	plus

Contig Sequence (1685 bp)

>U35_3477 1685 Hv_44K_v2
CTAGTTGACGATACACTGTTGAGGAGGAGATGGCGCCACTCGCACCTAAGCACCGCAAGG
CAGCACCTTCCCCTTCCCCCCCGGAGGCTTCTTCTGACTCCGGCAGCGACTCTGACCTCC
ACCTTGATGACCACTCCGATCCAGAGGACAGATTTTTCTCCACAGGGAACACCGCCGATG
ACGATAGTGACGAGGAGGAGGAGGAGGATGAAGATGAGGAGAGCCTCCATGAGGAGGAGG
ATGATGGTGAGATGGGGGAGCTTGAGCAGCAGTATCGCACCCTCCAGGCCAATCAGCAAA
GCATTCTTCAAACCTTGAAACAACACAGGGACGACGATGTCTCGAGAGGCCAGGCAGTCA
AAAACCAAAAGGCGCTATGGGATAAGACACTGGAAATGAGATTCTTGCTGCAAAAGGCGT
TCTCCACTTCAAACAAGCTTCCCAGGGATCCATCCAAGTCAAGGTTCTGCAGTCACGATC
AGGAGATAGAGCAAGCATATGTTGATCTGTTGGACTCATCGAAACAGACTCTCGGTTGCA
TGCTGGAGCTGCAGGAGGCTTTACTGGAGCGGAACCAGGCTGCAAAGGGTGTGAATGATA
CATTGCCTGACTCAAATGGAGAGGATGATGAGTGGTTGCAAGTACAGAAGGTGCAGACAA
GGATAACCCCGTTCAGAAATACTGAGATAGATAAATGGCAGAGGAAAACACAGGTCACAA
CTGGCGCTGCTGCACTGAAAGGAAAGTTGCACGCATTTAATCAGAACATAAGTGACCAAG
TTGCTGGTTACATGAGAGACCCAAGCAGGATGATTAACCGGATGTACTTGCGAAAATCTG
ATGTTGGTGTATTCGGGGAGAGTGCAGCAGAGTCTGCTACTACCGTGGAGGGGAAGGATG
TGGAAGGTGATCCTGAACTTATTGATGACTCTGAATTTTATCATCAACTTCTCAAGGAGT
TTCTCGAGTCGTGTGATACAGGAGGAGCATCTGAGTCTGCATTTTATGCTCTGAGGAAGA
AGCAGAATAAGAAAAGAAAACTCGTTGATCGCCGCGCTTCAAAAAGCAGAAAGATAAGGT
ACAGTGTTCACGAGAAGATTGCTAATTTCATGGCCCCGGTGCCTATGACGGTTCCTCCAA
TGGCTTCGAAATTGTTCGAGAATTTGTTTGGAATGGGCAACCTGCAGAAGTCAGCCGCGG
TCTGATTTTAGGAGGTGTCCAAAATGTTGTTCAAGCTATTTTTCGCGTGATGGATGCTAA
TATGTGAAACTGCAGTAACACTACAAAACTTGTACCCACGCATGCATGACCTATGTAGAA
GATGAGTGTTATGAATATCAGTTGCTGATCTGATTAGTAAGATGCCTTCGGATTCTTCAT
CTGTTAAACATAGAAGAGGATAAGCAAGAGAGTTATCGATGTATTCTTAAACCGTGATTT
ATGAAATCAAGTATTTTTCGCCTTTTTTTTTTGCTCTTGGGAAAGAAAGCAGGGTCATAA
AAGTTGTAAACTAATAAATAGCTCTGATAGTGCATACATATCTCTTATCTGAGCAACTAA
TTGACATACAACATCATGGGGGCTATTACTCCCTCCGTTTTTATGTACTCTATTTAGCTT
TGCCTTCAATTAAATTTTATGAACTTTGATCGACTTTATAGAAAAAGTTATTAACATGGT
TCAAT

Homology of Contig U35_3477 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g34200.1	420	4e-159	protein\|AATF, putative, expressed
Brachypodium v1_2	Bradi2g03790.1	409	0.0
Arabidopsis v10	AT5G61330.1	436	1e-107	rRNA processing protein-related \| chr5:24657287-24660103 REVERSE LENGTH=436