barSeed - Barley Seed Development Database

Probe CUST_3100_PI390587928

Source Contig U35_6594

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3100_PI390587928	Hv_44K_v2	GTGATACCAATCTATCAATATGTCCATGCAGTTGTAGCTCTATTATTTTCCTTCTCTATG	628	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23389.1	588	2e-24	351 - 410	100	60 / 60	minus	ABC18237 ABC47436
JLOC1	JLOC1_16165.1	540	8e-25	303 - 362	100	60 / 60	minus
Harvest21	ABC50678	570	3e-25	27 - 86	100	60 / 60	minus
Harvest21	ABC18237	780	3e-25	629 - 688	100	60 / 60	plus	ABC18237
Harvest35	U35_48689	570	3e-25	27 - 86	100	60 / 60	minus
Harvest35	U35_6594	780	3e-25	629 - 688	100	60 / 60	plus

Contig Sequence (780 bp)

>U35_6594 780 Hv_44K_v2
TTCATTCCCTTCCTGATGAGGCTCGGGGCGGTCGTCGCGGCGGCCTCTTCAGCGGCGTCG
CCCGACGGGCTCCATGCACGTGTGATGGATGCTGGTTCCTAAGGTGAGCGCGATGCCGAG
GAGAGATGGCATCGCGGACGGCATCCAAGGACATCATCACGCTCAACGGCTCAGCCGCCA
TCGTCATCAAGTTCTTTGATTACGCAGCGAACAGGTGTGCGATGGGCCGGCAAACAGCAG
TGCCGTCTCTATCCCCGATGCTGCATCTTGGTGGGGCTAATGGCCCTGCGCGCGGTGCGC
CCTGGGCGGTGCGGACTGCAACTGCGCGTAGGGCCGCCACAGCTGCTTTCTCAAGGCGGC
GTGCGGACTGCCTGGTTTGGAATTGAAGGAGAGCCCTGGCGTTGTTCAAGTCCTGGAAAC
AGCCTCTTACAGAAATGTAGGGAAAGGCTTCGTACAATAGACCCAAAGTGGTCGGACCCT
TCCCCGGACCCTGCACAAGCGGGAGCTACATGCACCGGGCTGCCCCCCTCTATTTGAGGT
TTGGGATTGGGCAGTGATGAGCTTGTCTCTCATATCATTTTTCTCTTGTCTACATTTAAC
TTGATGTATGGAAGAATTTCTTATCTCAGTGATACCAATCTATCAATATGTCCATGCAGT
TGTAGCTCTATTATTTTCCTTCTCTATGTAGTTTCTTTGTACTATTTCATATGTGAGTTA
ACTATCTTGTTGAATATTTATATTTATTTTCTTTTTAGATTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6594 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None