barSeed - Barley Seed Development Database

Probe CUST_31009_PI390587928

Source Contig U35_3478

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31009_PI390587928	Hv_44K_v2	TCAGGAGATAGAGCAAGCATATGATGAGTGGTTGCAAGTACAGAAGGTGCAGACAAGGAT	648	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.507	1.198	1.161	0.789	0.413	0.443
Raw	85.644	100.300	94.063	94.262	18.161	21.673

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC09606	1040	3e-25	645 - 704	100	60 / 60	plus
Harvest35	U35_3478	1044	3e-25	649 - 708	100	60 / 60	plus

Contig Sequence (1044 bp)

>U35_3478 1044 Hv_44K_v2
AGCATCGTTCACCCCGCAAACCTAGCGTGCTCGCCGCCGCCGCCGACGACGACAGCGCCC
CAGCTCTCCGCTCCGGCGACCGCCGGTGCACCCCGGCGTTCTACTCCCCCGCGTCTCCAA
CCGCGGCAGGCACTCCGCAAACAAGGCAACGCCTAGTTGACGATACACTGTTGAGGAGGA
GATGGCGCCACTCGCACCTAAGCACCGCAAGGCAGCACCTTCCCCTTCCCCCCCGGAGGC
TTCTTCTGACTCCGGCAGCGACTCTGACCTCCACCTTGATGACCACTCCGATCCAGAGGA
CAGATTTTTCTCCACAGGGAACACCGCCGATGACGATGTCCAGAATTCCTCCACCAGTGA
CGAGGAGGAGGAGGAGGATGAAGATGAGGAGAGCCTCCATGAGGAGGAGGATGATGGTGA
GATGGGGGAGCTTGAGCAGCAGTATCGCACCCTCCAGGCCAATCAGCAAAGCATTCTTCA
AACCTTGAAACAACACAGGGACGACGATGTCTCGAGAGGCCAGGCAGTCAAAAACCAAAA
GGCGCTATGGGATAAGACACTGGAAATGAGATTCTTGCTGCAAAAGGCGTTCTCCACTTC
AAACAAGCTTCCCAGGGATCCATCCAAGTCAAGGTTCTGCAGTCACGATCAGGAGATAGA
GCAAGCATATGATGAGTGGTTGCAAGTACAGAAGGTGCAGACAAGGATAACCCCGTTCAG
AAATACTGAGATAGATAAATGGCAGAGGAAAACACAGGTCACAACTGGCGCTGCTGCACT
GAAAGGAAAGTTGCACGCATTTAATCAGAACATAAGTGACCAAGTTGCTGGTTACATGAG
AGACCCAAGCAGGATGATTAACCGGATGTACTTGCGAAAATCTGATGTTGGTGTATTCGG
NGAGAGTGCAGCAGAGTCTGCTACTACCGTGGAGGGGAAGGATGTGGAAGGTGATCCTGA
ACTTATTGATGACTCTGAATTTTATCATCAACTTCTCAAGGAGTTTCTCGAGTCGTGTGA
TACAGGAGGAGCATCTGAGTCTGC

Homology of Contig U35_3478 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g34200.2	352	2e-101	protein\|AATF, putative, expressed
Brachypodium v1_2	Bradi2g03790.1	409	7e-115
Arabidopsis v10	AT5G61330.1	436	3e-67	rRNA processing protein-related \| chr5:24657287-24660103 REVERSE LENGTH=436