barSeed - Barley Seed Development Database

Probe CUST_31001_PI390587928

Source Contig U35_4202

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31001_PI390587928	Hv_44K_v2	GTAATCTTGGATAGTTCTTTGCTTAAGATTGTGAGATGTAATCTCACCAGTTGCAATCTA	2090	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36871.1	3191	2e-24	3110 - 3169	100	60 / 60	plus	ABC09432
MLOC	MLOC_36871.4	1457	2e-24	1361 - 1420	100	60 / 60	plus	ABC09432
JLOC1	JLOC1_23795.1	2874	8e-25	2748 - 2807	100	60 / 60	plus
Harvest21	ABC09432	2158	3e-25	2091 - 2150	100	60 / 60	plus	ABC09432
Harvest35	U35_4202	2158	3e-25	2091 - 2150	100	60 / 60	plus

Contig Sequence (2158 bp)

>U35_4202 2158 Hv_44K_v2
TGGTGTCGTTGATGCGTTCTTCTTTGTCGGTTCCAAGCCCAAGGATGTGATCAAGCAGTA
CATTAGTGTTACAGGTACGCCTTCCATGCCGCAGCAGTTTGCAGTGGCATATCATCAGTG
CCGGTGGAACTATCGGGATGAGGAGGATGTTGGTGGAGTGGATGCTGGGTTTGATGAGCA
TGATATTCCATATGACGTGCTCTGGCTTGACATTGAGCACACTGATGGCAAGCGATATTT
CACATGGGATCGTTCCACATTCCCGAACCCAGAGGAGATGCAGCGGAAAATAGCAGATAA
GGGGAGGAAGATGGTAACGATTGTAGACCCACATATGAAGAGGGACAGTGGATACTACCT
CCACGAGGAAGCTACCGCCAAAGGTTACTATGTGAAAGATGCAAGCGGGAAGGACTACGA
TGGATGGTGCTGGCCTGGGTCATCATCATATCCCGACATGTTGAACCCTGAGATACGGGA
CTGGTGGGCTGACAAGTTCTCCTATCAAAACTACAAGGGATCAACTCCAACACTGTACAT
TTGGAATGACATGAATGAACCATCAGTCTTCAACGGCCCTGAGGTCACCATGCCTAGGGA
TGCTATACACAACGGTGATGTTGAACACCGAGAACTGCACAATGCATATGGGTACTATTT
CCATATGGCTACATCAGATGGGCTTCTCAAGCGAGGTGAGGGTAAAGACAGGCCCTTTGT
TTTGTCAAGGGCTTTTTTTGCTGGAAGTCAACGGTATGGGGCAGTTTGGACTGGTGACAA
CACTGCAGATTGGGATCACCTTAAATCTTCTATCCCGATGGTTTTAACTCTTGGTCTTAC
TGGCATGACCTTCTCTGGTGCGGATATTGGTGGATTCTTTGGTAACCCTGAACCTGACCT
ATTGGTGCGTTGGTACCAAGTAGGAGCTTTTTATCCTTTCTTTAGAGGTCATGCTCACCA
TGACACCAAGAGGCGGGAGCCATGGTTATTTGGAGAGCGAAGAACTGCCCTCATGAGGGA
GGCAATACATATGCGGTATTCATTGTTGCCCTATTATTACACTCTGTTCCAAGAGGCTAG
TGTAACTGGTGTTCCTGTTATGCGTCCTCTGTGGTTGGAATTTCCTGACGACAAGGAAAC
ATACAATAATGGTGAGGCTTTTATGGTTGGGGCAAGCATTTTGGCCCAAGGAATTTATGA
AGAGGACCAGAAATCAGTGTCGGTTTACCTTCCTGGAACAGAGTTATGGTATGACTTGAG
AAATGGATCCCCATACAAGGGCAGTGTGTCACACAAGCTGCAAGTTTCAGAAGATAGCAT
ACCAAGCTTCCAAAGGTCAGGTACAATTGTGCCAAGAAAGGATAGATTCAGGCGCAGTTC
TACTCAGATGGTGAACGATCCATACACCCTGGTGATAGCCCTCAATAGCTCGGGTTATGC
AGAAGGTGAACTTTATGTGGATGATGGGAAAAGTTATGATTACCAGCAAGGGGCATTCAT
CCATCGGCGTTTTGTATTTGCAGACAATAAGCTAACTTCGATCAATATTGCGCCTGATAG
TCTGACCAAGAAGGTTTATTCAACTGAGTGTGTGATTGAAAGAATTATAGTGCTTGGGTT
ACCATCGGGAGCAAAGAAGGCCATCATTGAACCTGGGAACCAAGAAGTGGAAATTGATCT
AGGACCGATTAGTTTAAGGAGTGGTTCAAAGTCTGTTGCACCAACAGTCAGGAGGCCCAA
TGTTCGAGTCGTAGATGATTGGACGATAAGGATCGCATGATATGCAGCCCATTCACACCT
GGAGCCTGATGTCTCTATTGTTCGCGTCAGGCCATAAACTTGGGTAATGCTAGAAGTGTA
GTTTCAGCCTCGTAAATGTTCTCTGTGGGCACCCAAATTTCGTTGTTTCGGTGGCCTCAA
AATTTCTGCATGTATCTGGTACGCATGCTGCTTGTACTTCCAATTTTGACATAAGTGAGA
GACATTAATTGCTGATGTATACCTGTAGCTTTTATACTGAAATTTGTGTGCCAGGTATGA
TGTATGTGATATGAAGTTCTTGTGACACTGCAATTTAGAATATTTTTTTTGTAATCTTGG
ATAGTTCTTTGCTTAAGATTGTGAGATGTAATCTCACCAGTTGCAATCTAAAAAAAAA

Homology of Contig U35_4202 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g11720.1	920	protein\|glycosyl hydrolase, family 31, putative, expressed
Brachypodium v1_2	Bradi1g69780.1	915
Arabidopsis v10	AT5G63840.1	921	\| Symbols: RSW3, PSL5 \| Glycosyl hydrolases family 31 protein \| chr5:25545056-25548922 FORWARD LENGTH=921