barSeed - Barley Seed Development Database

Probe CUST_31000_PI390587928

Source Contig U35_4203

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31000_PI390587928	Hv_44K_v2	AAATGATTTTTTCCGGCAAACAAGCCGTGTTTTGTTGCCAGGTTGGGCTCTTTTAGCTGA	1933	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58141.2	1764	2e-24	571 - 630	100	60 / 60	minus	ABC11642 ABC49822
JLOC1	JLOC1_37746.1	1480	8e-25	264 - 323	100	60 / 60	minus
Harvest21	ABC11642	2085	3e-25	1867 - 1926	100	60 / 60	plus	ABC11642
Harvest35	U35_4203	2152	3e-25	1934 - 1993	100	60 / 60	plus

Contig Sequence (2152 bp)

>U35_4203 2152 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAAGTGCACAGCTACTCGGTCTGATTTTTCCTACCTACCA
GCGCGTGTCACGACCTCAGGCGTCTCCTCCTCTCCACCTTCTCACCGGCTCGCCCTCCAG
GCCTCCACCGTGCTCCTCCCAAGCTCCACCCCGCCGCCGCCCGCTCTTCCCAGCGCGCTG
CCGCCCTGCTGCTCCGTCCCACCCAGCGGTCCGCTCTTACATCTCCGCCGCTGAGCCGCC
TTCCCCCGACGGCGGCACCATTGGCGGCACGGCCGCGCGACGGTGGTCCAGCGCGGGCGA
CGACGGCGACATGGTCGTGTAGCGGCGTCGCGGACCATGCCAGCGGCCGTATCCGCGTAG
AGGGAGATCGAAGATGAGGAATACACAGCGAAAACCATCTATTCTCAACTTCGATGCTGG
ATGTGGATCTTCCTTATCTTTTATTGTAATGGGCTTGGTGGGATGCACCCTCATTGCCGG
CCTATTTTTCATCAGCCATCAAGTAAAAACTTGGCATGCCCATAGCTATTCCAGCCATCT
GCCTGCCACCAGAGAATTGGAAGAGGTTGAGGAAGAGCACTTTCGGTTGCCACCTCCTCA
CAAGGTGAATCCTCGTGCAGTGAAACGTGCAGTCAAACGTCGGAGCTCTAGCAAGGTTGC
AAAGATCATCGATGAGTATCTGGATGGGTCCTCAGCATTACATGACATGTTCTTTCCTGC
TGAAACAACTGCTGTGAACCCAACAAAAGGCGGAAATGATAGCATGTACTTTTATCCCGG
TAAGGTATGGCTGGACACTGATGGAAATGCCATTCAAGCCCATGGTGGTGGGATTCTGTA
TGATCACAATACCGCGACATACTATTGGTACGGAGAAAACAAAGATGGACCAACCTATCA
AATTCACCCTGAAGGGGCACAACGGATAGACATTATAGGGGTAAGCTGCTACTCGTCAAA
GGACCTATGGTCATGGACCCACGAAGGAATCGTGCTTCCCGGAGAGCGTACTAATATCAC
ACACGACCTTCATATATCAAAGGTTCTTGAGAGGCCTAAGGTGATATATAATGACCGTAC
CCGGCAGTATGTCATGTGGATGCACATCGACGACGGCAACTACACTAAAGCATCTGTCGG
TGTGGCCGTCAGCAGATCTCCCACAGGGCCTTTCAGTTACCTCTACAGTTTCCGGCCACA
TGGATTTGATAGCAGGGACATGACCATCTTCAAAGACGACGACGGCATGGCTTACATCTT
CTATGCCACTCGCGGCAACACCGAGCTTCATGTCAGTCCATTGACAACGGATTATCTCAA
CATCACATCGGCGATGAGGAGAATATTGGTAAGGCGGTTCAGGGAGGCTCCGGCCGTGTT
CAAGCTCAGAGGAACCTACTACATGATCACCTCACGGTGCTCAGGCTGGGCTCCGAACCC
AGCACTGGCACATGCCACGCACAGGATCATGGGGCCATGGGAGACGCTAGGGAACCCATG
CGTCGGAGGCAACCACTTCCTCCGGCTGACAACGTTCCTGTCTCAGAGCACGTTCGTGCT
CCCGCTCCCTGGCTTGCCCGGCACATTCATCTTCATGGCAGACAGGTGGAACCCGTCGGA
TCTGCGCGACTCCCGGTATGTCTGGCTGCCATTGTCGATCGGAGGTTTGGCGGATGAGGC
GTTGGATTACAGCTTCGGGTTCCCGTCGTGGTCGAGGGTGTCGATTTATTGGCACAGGAA
ATGGCGCCTCCCTGAAGGTTGGGGGAAGAGGTATACTGCTACCTGAATGTCTTTTTAGGC
AAGAAGAAGAGAAGAGCAGTCTGGAAAGTAGATATACGAATATACGATGGAATCGGGTCA
TGAAATTTGAGATCTGTGTTGGAGCTTTGCCGCGGCGGAACATCCAAACACGGTCCAGTT
GGGCCGTGTTGGGAAATGATTTTTTCCGGCAAACAAGCCGTGTTTTGTTGCCAGGTTGGG
CTCTTTTAGCTGATTGGCGTAGTGCGGCACTGATGCTTCCGGGTCTGAATCTTGCCGGAC
ATATATATATATATATATATACTCCTATATATAGATAGATAAAGCAAGAAATCAAACACC
GACACGCTCCGGTTCAGCTGCTGAGCGTGCGCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4203 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g65720.1	536	protein\|expressed protein
Brachypodium v1_2	Bradi2g50980.1	472
Arabidopsis v10	AT5G67540.2	471	Arabinanase/levansucrase/invertase \| chr5:26944253-26945757 REVERSE LENGTH=471