barSeed - Barley Seed Development Database

Probe CUST_30_PI390587928

Source Contig U35_7841

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30_PI390587928	Hv_44K_v2	CACCGCATCAGCTCCAAAACTTATATGAAAATTGATTGATTTAGAACCGGTGATCTAAAA	844	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.486	2.381	1.161	0.587	0.908	0.858
Raw	35.589	38.110	16.523	12.336	6.817	6.864

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52471.1	970	9e-22	40 - 97	98	57 / 58	minus	ABC16879
JLOC1	JLOC1_33626.1	1391	5e-22	875 - 932	98	57 / 58	plus
Harvest35	U35_7841	917	3e-25	845 - 904	100	60 / 60	plus

Contig Sequence (917 bp)

>U35_7841 917 Hv_44K_v2
GGCTCTGCTGCAACCCGGCGGAGTTCATCGGCTCCTCTGCAGAGGCCGTTCCCCTCTCAT
TTCTTCCGCACCTACCTCTATCTGCTCGGCGGCGATGGCTGCTCCCTCCGCCGCCCTCTC
CATATCCGGTGTGGCGCATACCAGTCCATTTGGCTGCAGGCCGAAGAAGCTGATCTTAAA
CAGAAATTACTTGCAGCTTGCAGTTCCCTCAAATTCCCAAAATGCAAATCATTATGGAAA
GTTAACCGTCTGCAGAGCAGAAAGTGAAGATTCTAAAGGCGGGGGAGGATTCTTGACTGG
ATTTCTTATAGGGGGAGCAGTCTTTGGAACACTGGGTTATGTCTTTGCTCCTCAGATCAG
CAAAACTTTAGATACATTGCTGAATGACGATGAGCAAGATGGTAAGCCTGACGAGCAAGG
CTTCCAAAGTGTACCAAGGCCACGTAATGCTCAATACTATGATGAAGGTTTAGAGAAAAC
TCGTCAGACACTGGGTGACAAGATAAGCCAACTGAACCTTGCGATTGACAAAGCTGCCGC
CCGATTGAAGCGTGTCACTGGCAGTGTCGAAAAAGAGGCTGTTAAAGATGAAACCGAAAT
TGAAATGTCAACACTGGATGATAATGGAGTTTTGGAGGAAAACTTGAGTGAACAGGGTTT
TGTGCAAGGAGAAAGTGCAATATAATGATCATATCGTGTGAGTAGCAGCATTGCCAGGTA
ATATTTCGGCGGGCAAGCTGATGGCACTCTATTCAACTAACGGGCACAGCCAAAATGATT
GCAACTAGGTCCTTGGAGATTTTTCCCGTGTTCAGCTGTTGTTGCTGTAGTTCTGTATAC
TCTTCACCGCATCAGCTCCAAAACTTATATGAAAATTGATTGATTTAGAACCGGTGATCT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_7841 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g39370.2	196	4e-65	protein\|expressed protein
Brachypodium v1_2	Bradi5g19940.1	197	1e-88
Arabidopsis v10	None