barSeed - Barley Seed Development Database

Probe CUST_30992_PI390587928

Source Contig U35_4211

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30992_PI390587928	Hv_44K_v2	TCATCCTTGGGTTCTCAGTGTTCATGGGCTTTTCAGTTCCACAGTACTTCAACGAGTACA	1465	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354226	2295	2e-24	1446 - 1505	100	60 / 60	plus	ABC05848 ABC05849
MLOC	MLOC_38373.1	2194	2e-24	1510 - 1569	100	60 / 60	plus	ABC05848 ABC05849
MLOC	MLOC_38373.2	2202	2e-24	1500 - 1559	100	60 / 60	plus	ABC05848 ABC05849
JLOC1	JLOC1_24944.2	2493	8e-25	1497 - 1556	100	60 / 60	plus
JLOC1	JLOC1_24944.1	2001	8e-25	1500 - 1559	100	60 / 60	plus
Harvest21	ABC10259	1444	3e-25	1250 - 1309	100	60 / 60	plus
Harvest35	U35_4211	1660	3e-25	1466 - 1525	100	60 / 60	plus

Contig Sequence (1660 bp)

>U35_4211 1660 Hv_44K_v2
CATACCACCACCACCACTACCACCACTGGAGGCCGCTGTACCGCTACGCCACTCCCCCAC
TCCTCACTGCCGCGCTACCGCTCCACGGGCTCGCATTGTGGCTCTGGTTTGAGGTCTCGG
GAGGAGGAGGAGGAGGAGCGCGCGTGATCTGAGGCGGGGCGGAGGGGCGCGGGAGAGATG
GCCGGAGGCGGGGGCGGGGGCGGGGGCGGGGGCCAGAAGCAGGACGACATGGCGCCGCAC
CCCGTCAAGGACCAGCTGCCCGGGGTCTCCTACTGCATCACCAGCCCTCCTCCGTGGCCG
GAGGCCATTCTTCTTGGCTTTCAGCATTATCTGGTCATGCTTGGAACTACTGTTATCATA
CCTACTGCACTTGTTCCACAGATGGGAGGGAACAATGAGGACAAGGCAGTTGTTATCCAG
ACATTGCTGTTTGTGGCTGGAATCAACACCCTTCTACAGAGTTTCTTTGGTACCCGATTG
CCTGCGGTGATTGGTGGATCATACACCTTTGTTCTGCCTACCATTTCGATCATACTCGCA
GGGCGCTACACGAACGAACCAGACCCGCACACTAAATTCCTCAAAATCATGCGTGGAACG
CAAGGTGCTTTGATCGTTGCTTCTGCACTACAGATCATAGTTGGCTTCAGTGGCCTTTGG
CGCAATGTTGCAAGATATCTCAGTCCACTGTCAGCTGCTCCTTTGATAGCGTTAGTTGGC
TTTGGACTGTATGAGCTGGGTTTTCCATCGGTTGCTAAATGTGTTGAGATTGGTCTGCCT
GAACTAATCCTTTTGGTGATATTCGCCATGTACCTGCCGCATACCATCCACATGATGAAG
TCGATCTTCGACCGTTTTGCTGTTCTCTTCACTATTCCCATAGTGTGGCTCTATGCATAT
CTTCTGACGGTTGGAGGAGCTTACAGGAATGTATCACCAAAGACCCAATTTCATTGCCGC
ACTGACCGCTCTGGACTAATTGGTGGTGCTCCCTGGATAAGAGTGCCATATCCTTTTCAG
TGGGGTGCTCCCACTTTTGATGCCGGCGAAGCATTTGCAATGATGGCTGCATCATTTGTT
GCTCTTGTGGAGTCCACTGGTTCCTTCATTGCTGTTTCAAGATTTGCAAGCGCCACACCT
CTCCCACCCTCTGTACTTAGCCGTGGTGTTGGCTGGCAGGGCGTTGGTATTCTTTTGGAT
GGCCTGTTTGGAACTGGAAATGGATCTTCTGTATCAATTGAAAATGCTGGGTTGTTGGCC
TTGACGCGTGTTGGTAGCCGAAGAGTAGTGCAGATATCAGCTGGTTTTATGATATTCTTC
TCTATCCTTGGAAAATTTGGAGCTGTCTTTGCATCAATACCTGCACCCATCTTTGCAGCT
CTCTACTGCGTCTTCTTTGCATACGTTGGTTCTGCTGGGCTTGGCTTCCTTCAATTCTGC
AACCTGAATAGCTTCAGGACAAAGTTCATCCTTGGGTTCTCAGTGTTCATGGGCTTTTCA
GTTCCACAGTACTTCAACGAGTACACCTCGGTCGCTGGATTCGGCCCTGTACACACGCGC
GCAAGATGGTTCAATGACATGGTGAACGTGCTGTTCTCGTCCAAGGCTTTCGTTGGTGGC
ATTGTTGCATACGTGCTGGACAACACGCTACACAGGCACG

Homology of Contig U35_4211 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g50820.1	539	protein\|nucleobase-ascorbate transporter, putative, expressed
Brachypodium v1_2	Bradi3g59600.1	540
Arabidopsis v10	AT5G62890.1	532	Xanthine/uracil permease family protein \| chr5:25243723-25247075 FORWARD LENGTH=532