barSeed - Barley Seed Development Database

Probe CUST_30990_PI390587928

Source Contig U35_4213

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30990_PI390587928	Hv_44K_v2	AGCTACATATGCATGTGATGTAAATACAAGCAGGTGTGCATCTTTTAAACCCATATGGAA	1344	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.023	0.066	0.544	1.745	1.753	2.505
Raw	14.252	65.500	502.181	2401.033	892.959	1393.024

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_36855.2	1526	8e-25	1444 - 1503	100	60 / 60	plus
JLOC1	JLOC1_36855.1	1470	8e-25	1388 - 1447	100	60 / 60	plus
Harvest21	ABC09284	1440	3e-25	1345 - 1404	100	60 / 60	plus	ABC09284
Harvest35	U35_4213	1440	3e-25	1345 - 1404	100	60 / 60	plus

Contig Sequence (1440 bp)

>U35_4213 1440 Hv_44K_v2
GATAGTTATATACATCTTTATGGTTGCGTCCAATATTTCCATCACCCTAGAATCCATTGC
AGAGAAAGCCTCCACCATGACAGACCACCTTCAAGTTCAACAACAAGCATTGGAGCTACC
TCCGGGGTTTAGGTTCCACCCGACGGATGAGGAGATCATCAAATTCTATGTGGTCCCCAA
GGTGCTCGATGAAGCCTTCGTTGCCGCCGCGATTGAGGTTGTGAACCTCAACAAGTACGA
GCCATGGGAGCTACCAGAGAAGGCGAAGATGGGGGAGAATGAGTGGTACTTTTACTCCCG
AAAGGATCGCAAGTACCCCACCGGGATACGAACTAACCGGGCGACGGATGTCGGCTATTG
GAAGGCCACCGGAAAGGACAAGGAGATCTTCGACCCACCGCTCACGCTCATCGGCATGAA
GAAGACGCTCGTCTTCTACAAAGGTCGGGCGCCTAGGGGGGAGAAGACCAACTGGGTCAT
GCATGAGTATAGGATCGAGAGCAGCAAGCAGTTGATATCCAACTCGACCACCGCTACCTC
CAGAATCAGCACCACCAAGGCAGCTTCCAAGGAACAGTGGGTGGTTTGTAGGATCTTCCA
TAAGAGCACCGGACTAAAGAAGATGGTGATGCCATCATATGACATGCCAATGTCCATGGC
AGCAGAACATCAGCACGACTTTGTCGGCTTAGATACATTGCCTCCTCTCATGGACTATGA
TATGTCGTCAACGTTGGCACATCCACCGCTGTTTCCTGGAGCTACTTCGTACCAGTTGCA
CAATGTCGAGTCCGGTTCATCGATGATGGGCAGTGTGGCGCTTCCTATGATGAATGACCA
CTACTATGGGAACCACCACCACCAAGTGATGGCCGCCCCAACGCTCCCGTTGTCGCTCTA
CCAGCACCAACAACAACATCAACAGATGATGATTCATATGGGTGCAGATCAGGGTTTCAT
GGTCGGGGCTGAGCCTGGGAGTGGGATGTCGTCGATGCTGTCACAAGAGGACGCCGTGGC
CGGGCTAAGGAACAACTACCCGGGGAACACCACTGCAACAGCAGTTGGCGAGACCTCGTG
GATGAACATGGGTATGGATGACATTTGGCAGAACTGATGATCAGATAACCCAAGACAACA
TATATATGTGTGTGCATCCATAAATTAATCATCCATCAGACGGTCGGTCGAGCCATATAT
TGATTTGTGCTACAATTTATTTGTTAGTGTGACCTTGAGAGAGTTTGTAATCATCGCATG
GCTTGGCATGCCTCTCTTGTGCTAGTTTTTCAATTGTGTGTATGTGTATTGGCTTGTATA
TGCACTACCCACCGGGGTATACCTAGCTACATATGCATGTGATGTAAATACAAGCAGGTG
TGCATCTTTTAAACCCATATGGAATAAACTATTTTGTTTAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4213 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g29840.1	334	9e-74	protein\|no apical meristem protein, putative, expressed
Brachypodium v1_2	Bradi4g34157.1	355	9e-72
Arabidopsis v10	AT2G24430.1	316	1e-70	\| Symbols: ANAC038, NAC038 \| NAC domain containing protein 38 \| chr2:10383517-10386386 REVERSE LENGTH=316