barSeed - Barley Seed Development Database

Probe CUST_30989_PI390587928

Source Contig U35_4215

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30989_PI390587928	Hv_44K_v2	TACCGACAATGAGATCAAGAACTACTGGAGAACACATATGAGGAAGAAAGCACAGGAGAG	501	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52439.3	831	2e-24	544 - 603	100	60 / 60	minus	None
MLOC	MLOC_52439.7	1172	2e-24	524 - 583	100	60 / 60	minus	None
MLOC	MLOC_52439.4	1725	2e-24	544 - 603	100	60 / 60	minus	None
MLOC	MLOC_52439.5	1822	2e-24	544 - 603	100	60 / 60	minus	None
MLOC	MLOC_52439.6	1697	2e-24	544 - 603	100	60 / 60	minus	None
MLOC	MLOC_52439.1	1663	2e-24	684 - 743	100	60 / 60	minus	None
MLOC	MLOC_52439.2	1500	2e-24	630 - 689	100	60 / 60	minus	None
JLOC1	JLOC1_33603.4	1513	8e-25	658 - 717	100	60 / 60	plus
JLOC1	JLOC1_33603.3	1455	8e-25	600 - 659	100	60 / 60	plus
JLOC1	JLOC1_33603.2	1524	8e-25	669 - 728	100	60 / 60	plus
JLOC1	JLOC1_33603.1	1278	8e-25	423 - 482	100	60 / 60	plus
Harvest21	ABC12131	759	3e-25	474 - 533	100	60 / 60	plus
Harvest35	U35_4216	1164	3e-25	454 - 513	100	60 / 60	plus
Harvest35	U35_4215	647	3e-25	502 - 561	100	60 / 60	plus

Contig Sequence (647 bp)

>U35_4215 647 Hv_44K_v2
GCTTGCTTCTCTCCCTACTAGCTTCATTCTTCTTCTTCTTCCAAACAGACTGGAGTTCAT
CAAGGATCCCGTCCTGAAACTGGAGCCCACAAGCACTCAAAGGAAGAAGAGCAAGAAGAC
GGGCTCCCAGCCGATACAAGGTAGGAGCGAACAACGTTAGGGTACTGTCGTTATATCTCC
TGAGTTGATATGGTGACAGTGAGAGAAGAGACACGCAAAGGGCCATGGACAGAGCAGGAG
GACATGCAACTGGTATGCACTGTCCGTTTGTTCGGTGAACGCCGTTGGGATTTCATTGCC
AAAGTATCAGGTTTGAGGGGTGGGGATCCCAAAATTAGGCCTCAACCGCACAGGAAAGAG
CTGTCGCCTCCGGTGGGTCAACTACCTCCACCCTGGCCTCAAGCGTGGACGCATGACTCC
TCATGAAGAACGCCTCATCCTTGAGCTACATGCTCGGTGGGGAAACAGGTGGTCCAGGAT
AGCACGGAAGCTGCCAGGGCGTACCGACAATGAGATCAAGAACTACTGGAGAACACATAT
GAGGAAGAAAGCACAGGAGAGGAAGAGGAACGTGTCACCCTCATCATCTTCATCCTCAGT
GACATACCAATCCTGTCAGCCACAGACGCCATCGATCATTGGAATTG

Homology of Contig U35_4215 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g37970.1	243	9e-68	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi4g04050.1	242	3e-69
Arabidopsis v10	AT5G59780.3	235	4e-54	\| Symbols: MYB59, ATMYB59-3 \| myb domain protein 59 \| chr5:24082425-24083350 REVERSE LENGTH=235