barSeed - Barley Seed Development Database

Probe CUST_30988_PI390587928

Source Contig U35_4216

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30988_PI390587928	Hv_44K_v2	CACGATATAATCAGCTATCCCCTGAAAGACTTTTCTAATGCAAACATGATTAGCAGGTGT	1085	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.212	2.364	1.065	0.939	0.262	0.368
Raw	116.106	191.052	80.683	122.301	10.446	17.067

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52439.1	1663	2e-24	52 - 111	100	60 / 60	minus	None
MLOC	MLOC_52439.2	1500	7e-23	1 - 57	100	57 / 57	minus	None
JLOC1	JLOC1_33603.4	1513	8e-25	1290 - 1349	100	60 / 60	plus
JLOC1	JLOC1_33603.3	1455	8e-25	1232 - 1291	100	60 / 60	plus
JLOC1	JLOC1_33603.2	1524	8e-25	1301 - 1360	100	60 / 60	plus
JLOC1	JLOC1_33603.1	1278	8e-25	1055 - 1114	100	60 / 60	plus
Harvest35	U35_4216	1164	3e-25	1086 - 1145	100	60 / 60	plus

Contig Sequence (1164 bp)

>U35_4216 1164 Hv_44K_v2
GCTTCATTCTTCTTCTTCTTCCAAACAGACTGGAGTTCATCAAGGATCCCGTCCTGAAAC
TGGAGCCCACAAGCACTCAAAGGAAGAAGAGCAAGAAGACGGGCTCCCAGCCGATACAAG
GTAGGAGCGAACAACGTTAGGGTACTGTCGTTATATCTCCTGAGTTGATATGGTGACAGT
GAGAGAAGAGACACGCAAAGGGCCATGGACAGAGCAGGAGGACATGCAACTGGTATGCAC
TGTCCGTTTGTTCGGTGAACGCCGTTGGGATTTCATTGCCAAAGTATCAGGCCTCAACCG
CACAGGAAAGAGCTGTCGCCTCCGGTGGGTCAACTACCTCCACCCTGGCCTCAAGCGTGG
ACGCATGACTCCTCATGAAGAACGCCTCATCCTTGAGCTACATGCTCGGTGGGGAAACAG
GTGGTCCAGGATAGCACGGAAGCTGCCAGGGCGTACCGACAATGAGATCAAGAACTACTG
GAGAACACATATGAGGAAGAAAGCACAGGAGAGGAAGAGGAACGTGTCACCCTCATCATC
TTCATCCTCAGTGACATACCAATCCTGTCAGCCACAGACGCCATCGATCATTGGAATTGG
CGACCAGGAGCTTCATGGTGGCAATAGCTGCATCACAAGCATACTGAAGGGCACGCCTGG
TGACATGGATGGATACCTCATGGATCAGATATGGATGGAGATTGAGGCACCCTCTGGGGT
CAACTTTCATGACGGGAAGGATAATTCATACAGCAGCCCCTCTGGCCCTCCGCTAACATC
ACCGATGTGGGATTACTACAGCCCTGAGTCAGGATGGAAGATGGATGAGATAAAAATGGC
CCCACAAGTTGGTCACAGTAAAGGAATTGGCCCCAGTTATTGAAGCCATATATATTGCAT
CAGATTACTAAGTTACTTGCAACCTAGCAGAAGTGAAATGCTTTTGTAGAAAGAACCATT
AGCATGGATCTAAAAAATATTTATATCTATCTAGCATTCCAAGTGTGCTCATGTTTTATG
TATCTGCTATGTAGTAGTATCTAGTGTGCAAGACATGTACTGCAAGGACACTCCCACTCT
GTATTCACGATATAATCAGCTATCCCCTGAAAGACTTTTCTAATGCAAACATGATTAGCA
GGTGTTATAAAAAAAAAAAAAAAA

Homology of Contig U35_4216 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g37970.1	243	1e-133	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi4g04050.1	242	3e-142
Arabidopsis v10	AT5G59780.3	235	4e-79	\| Symbols: MYB59, ATMYB59-3 \| myb domain protein 59 \| chr5:24082425-24083350 REVERSE LENGTH=235