barSeed - Barley Seed Development Database

Probe CUST_30981_PI390587928

Source Contig U35_4223

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30981_PI390587928	Hv_44K_v2	TGCAGAAAAAGTATGGTATATGTTGTGCGATTGCATCTTTGTCAGCAGAATCAGGATGCG	1831	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.687	1.680	0.912	0.970	0.645	0.499
Raw	106.319	167.507	79.898	136.535	31.283	25.936

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58901.1	2554	2e-24	2289 - 2348	100	60 / 60	plus	ABC10315 ABC10316 ABC35065
JLOC1	JLOC1_38294.1	2062	8e-25	1881 - 1940	100	60 / 60	plus
Harvest21	ABC35065	338	3e-25	89 - 148	100	60 / 60	minus	ABC35065
Harvest21	ABC10315	1917	3e-25	1832 - 1891	100	60 / 60	plus	ABC10315
Harvest21	ABC10316	495	6e-22	29 - 88	97	58 / 60	minus	ABC10316
Harvest35	U35_4223	1983	3e-25	1832 - 1891	100	60 / 60	plus

Contig Sequence (1983 bp)

>U35_4223 1983 Hv_44K_v2
GCCCTGTCGTCGCCTCCATCCCTCCATCTCTCTCCCTCGCTGCTCGCCGCTGCCTCCCCT
CCTCCGCGTCGTGCTCCGAGTCGGCGGCCTCCTCCGCCACCCGTCTCAGCAGTTGTAAAC
ATGCTTCATCATTCAAACAGCCGCCAGCAGAGGAACAGAGGATCAAAAATCAAAACGTTA
CTCAAGGTCACCTTACTCTTAGGTGTGGCTGTTTGGCTTGTGTATCAGGTGAAGCATTCT
TATGATAAGAAAAATGAGTACTACAATGCTACTGAGGACCAGCTTTCCCATGATGATAGA
AGCATGTTCCAGGGCAGGAAAGAAAGGCTAGGTACTTATGCTGATGGTAATGTGGAAAAG
GCGACAGAGAGGACCGATGTAACAGGCAAACAAGAGGAAGAGAATAGTGGAGAAAGTGTC
TTTGACAAAGACAATACTGACTCCCATGACGATGGTTCGGGAAGCACAGAGAGGTCAGAG
GCTGAAGAAGGGCAAGCCGGCCGCACAGATGATAATGCTGAAGCACATCTTAATGAAACA
TCTGAATCCAACTCATCTGATGCTGAGACTAAAACTGATGTCCATTCAACTGGAGATGAT
GTACCCCATGAAGAAGAGGCACAAAGTGATGGATCCGCTAATGCAGGTCAGATCAATGCA
AGCAGCAATGGTTCAGATGGAGAGCAATCTGAGAAAAAAGGGACAGTGGAGTCTCAAGCT
GACTCCGAGTCCCTTTCTGAAGACACCAAGGCTGGAACAGGCGACGAGCATTCCGCTGAG
ACTCTTCCAGATGAAACAGGCAACATACCAGCGGTTCATAATGAAAATCCTCAAGGCGAT
GCAGCTTCCAGTACATCTGATGCTTATGGGCATAGCAACAGTGAGCCTGTTCATATAGAG
ATTGGATCTGAACATGAAGGAGCAATAACATCATCTGTGACTACATCTGGTGATGCTGAG
AAGGGTAATTCTGTGGAGACTAATCCATCTGAAAGCATCTTAGTAGAAGAAAAGGCTGGC
GGTGATGGCGAGAAGGGCTCAGAAACGAGTACAGCTAATGTGGCGTCAGATGCCCAAGAA
GCAAACACTGAGGAAGGCAATGCTGCAACAGAAGTTCGCGCTGACCAGGCTGCAAATACG
CAGACAGAGAACTCCGAAGGCGCCTCTGCTGCTGCTGAAGGAGCAAATGGTTCTCTAGAA
GAGACGAAGGCTGTGGAGAACCAGATTGATGGAGCCACAAAAGGGTCAAGCAATGGTGAT
CAGGACAATATCAAGATTGAAACCAACACATCTACCAGTGACGAGCACAATGAACGTCAG
AGCGTCGATGTCAGTGCTGGGTCGAGTGGCTCAAATGACAGTGGCCCTGAACAAACTGGA
AAAGCTGAAACCCAGTGATAGCACCAAACGCATACGGACATTGTTCAGCATACGCGATTG
TTCATGGACACGAAGAGGAGCTACTGCACATAGAAAGATTGTTTGTTTGTTCAGATTGAG
GTTACATCCTTCAGTTGATGTTGTTGATGCACAACTGTGTCAATTGTGCAGACTATGTGA
TCCATGCACTACAAGACTATTTGCACGGCAGTGTTTTTCTTGCCAAGTTACCTCAAGAAT
GTGACTTTGGCTGCCAGGTTTCAAATCACTGCGAAGTAATCTGTTCATGCCTCCTATACC
ACGCTGGCGACCTCTGTTCTTAATGTAACTGTAAGCTGGAGAACAACAACAGTCAACTGC
TTGCCTGCTTCTTGGTTACAGCTACTATGTTTGGTGTTGTTTTCTCCCTAGTCCCTAGCC
TTTTGGTGCTCCTTTCTACACTTGTTTGACTTGCAGAAAAAGTATGGTATATGTTGTGCG
ATTGCATCTTTGTCAGCAGAATCAGGATGCGTTTTTTTTTAAAAAAAAAAAAAAAAACTG
TCTTAGATTCATTGTTCCTTGGTTGTTTGCGAAATCTGGTTGCTTGAAAAAAAAAAAAAA
AAA

Homology of Contig U35_4223 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g36050.1	423	1e-122	protein\|expressed protein
Brachypodium v1_2	Bradi1g38080.1	461	7e-159
Arabidopsis v10	None