barSeed - Barley Seed Development Database

Probe CUST_3096_PI390587928

Source Contig U35_6598

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3096_PI390587928	Hv_44K_v2	CCGGCCCTCACCCGCGACGGCTCCCGCCTCGTCTACGTCTCCACCGCCGTCCCCGCGGGC	477	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357331	2423	2e-23	486 - 543	100	58 / 58	plus	ABC09696
Harvest21	ABC15732	517	3e-25	455 - 514	100	60 / 60	plus
Harvest35	U35_6598	537	3e-25	478 - 537	100	60 / 60	plus

Contig Sequence (537 bp)

>U35_6598 537 Hv_44K_v2
CTACTGGCCACCCAACACACCACACGCACACACCAGTGCCCGCCCGCCATGGCTCGCCGC
GCCGAGCTCCTGCTCCTGCTCCCAGCAGCCATCCTCCTCCTGCTAGCTGCCACGCCCGCG
CTCTCCGCCGCCGCGGCCGGCACCATCGTCTTCACCACGCTCGGCCGCAGCCGCTACGCC
TTCGACGTCTACGCACTCCCGCTCGCCCCCTCCCTCTCCATACCCGCCTCCCCTGCCGCA
GAGCTCCGCCTCACCGACGGCGCCTCCGTCAACTACAACGGCAACTTCGCGCCCTCCTCC
GACGCGCTCCTCTTCGTCTCCGAGCGCAACGGCTCCCTCAACATCTACCTCTCCCCCGCC
CCTACCTCCTCCTCTGCCTCCCGCCGCGAGGCGCTCGAAGTCGACGACGGCGACTCGTCT
CCCGCTGCGCCCCCGACGCCGCTGCTGCCCTGGGACCCCGTCGCGCTGCGGGACCGACCG
GCCCTCACCCGCGACGGCTCCCGCCTCGTCTACGTCTCCACCGCCGTCCCCGCGGGC

Homology of Contig U35_6598 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None