barSeed - Barley Seed Development Database

Probe CUST_30967_PI390587928

Source Contig U35_4238

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30967_PI390587928	Hv_44K_v2	CTTGAGAAATACTACTACTTGGCCGAAATGATCACTGTTGGTGTTATAATGTCCAAAAAA	946	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.291	1.752	1.075	0.725	0.295	0.344
Raw	5741.213	6738.713	3702.997	3849.250	567.815	714.368

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC43121	494	1e-23	11 - 70	98	59 / 60	minus	ABC43121
Harvest35	U35_4238	1016	3e-25	947 - 1006	100	60 / 60	plus

Contig Sequence (1016 bp)

>U35_4238 1016 Hv_44K_v2
CGCTGCCCCCGCCGAGGCGCAGCAGCCCCGAACGGCCGCCGCCCCCGCGCCGATTGGACG
AGAAGCCCCTCCCGCCGCCGGCGGCCGCGCTCGTCGCCTGCGTCGAGCGGCGCTGGCACA
CCGACGTGCTCCTCGAGGCCGGCCGCCTGGCCGCCCACTACCTGGTCGCGCAGGGCGTCC
TCCCCGAGCACGTTCTCCACGCCCGGGAAGACCCCAGCCCCAAGCAGCACCACGTTCTCC
ACGCTAGAGACGACCCCAAGCTCGGCGGAACTCGTGCGATCTGTGAAGTGAGTGAGATTC
TCGGTGATCCTCCTGGAGAACATGCTTGTGATTCTCTGCCTGATTTAGTTGGTCAGATGA
GCCAACAAGCATATTATGATCCTCCAGATAACCAAGTTCAAGATAAACATGCAGATGAAA
ACCAACATTTGGAGGATGATCAGGCCAAGGCAAATGACTACCGTTCTAGGATCTGGCTGC
TTCTTCCTTTCAGTGGTTCCTGAATTGTTGCATTTCACATGTCTTGGCTAATTTTCCCTT
GATCATGAGTTGAACTTCTTCAAGCGTTTCCTTGGGAGAGGCTTCCTGAAGCATGTGCAG
GACAATGGACTTCTTCAAGATATCTTCAACATCAAGGCTGGCAAGGCTGAAACGCTGTCA
TCGAATGACAAGAAAATCTTTAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGCTGAAC
AAGGATCGTCGTTTGGCACATATGTCTACGGGAGAGGAAGAACGCTGCTTTGTTTGACGA
GTAACAAGAAAGGAAACAAAACAAAACCTCATCGACCCGGCAGTTTACTCTGTTTGAGCT
GGAATTTATTTATTTATATCTGTGTAAACAACCACAGGCAGAATGTCCTTAGAGCTTGCT
CCTTCCTTGACTTGTTGTCTAATTATGATTATGATGGCTTGTTGTACTTGAGAAATACTA
CTACTTGGCCGAAATGATCACTGTTGGTGTTATAATGTCCAAAAAAAAAAAAAAAA

Homology of Contig U35_4238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None