barSeed - Barley Seed Development Database

Probe CUST_30960_PI390587928

Source Contig U35_4245

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30960_PI390587928	Hv_44K_v2	ATGATTCTGGGTAGCAGGTGTACTATGTGATTTGACAGTCATCTAATAGTAGTCTCATCT	2008	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.476	1.152	1.250	0.946	0.405	0.338
Raw	350.628	440.727	412.433	483.522	72.856	67.556

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18827.1	2039	2e-24	1922 - 1981	100	60 / 60	plus	ABC10050 ABC10051
MLOC	MLOC_18827.2	1816	2e-24	1737 - 1796	100	60 / 60	plus	ABC10050 ABC10051
JLOC1	JLOC1_13037.1	2012	8e-25	1933 - 1992	100	60 / 60	plus
Harvest21	ABC10051	769	3e-25	690 - 749	100	60 / 60	plus	ABC10051
Harvest35	U35_4245	2088	3e-25	2009 - 2068	100	60 / 60	plus

Contig Sequence (2088 bp)

>U35_4245 2088 Hv_44K_v2
GGCTCTTTCCCCCACCGCCCGAACTAAACCCTAAGCCGCCGCCGCCGCCGCCGCCGCCGA
CGCAGCAGCAGCCATGTCGCCGGCACCGCAGCCGCAGCTGAAGGACAAGGCGGCGCACGA
GGTGCCGCGCGCGACGGTGGCCAGCGCCGTGGCGTCCCTCACCAAGTGGATGCGCGAGCG
CGCGGCGGAGGCGCCGCCGAACCTGCTCGCCGACGAGCGCGACGACCTCGTCGTGCTCCA
GCTCTCGCTCCGCCGCGTGCCGCCCAAGCCCACCACCAAGCCGCACCTGCTCCCGCTCCC
GCACCCCGTCGTCGCCCACTCGGCCGCCTCCGTCTGCGTCATCTCCGACGACCGCGCCGG
CTCCGGCTCCCCCGCCGCTACCGCCATCCTCGACGCGGCCAGGTCCCTCAAGCTCCCCGT
CTCGGAGGTCGTCCCCTTCTCCGCCCTGCGCACCGACTACCGCCCCTACGAGTCGCGCCG
CCGCTTCGCCGCCTCCTACGACCTCTTCCTCGCCGACCGCGCCCTGCTCCCCATGCTGCC
CCGCCTCCTCGGCAAGGCCTTCTACTCCACCAAGAAGGCCCCCATCGCCGTCGACTTCAC
CCGCGCCGGCTGGCCGGAGCAGGTCCGCAAGGTTCTGGGCTCCACTTTCCTGTACCTGCG
GACCGGGACCTGCTCGGGGATCAAGGTGGGCAGGCTCGACATGGAGGAGGAGGAGATCGT
TGAGAACGTGCTGGCGGCTGTGGAGGCCGCCGTGGAGAAGGTGCCCAAGAAGTGGGCGAA
CGTGAGGGCCCTGCATTTGAAGGCTGTTGATTCCGTCGCACTACCAATATACCAGGTTGT
GCCAGAGTTGGGCATGAAGATTGAGTTTCCGGTTGGGCGATTGGAAGCAGGAGAGGTCAT
CGATGCTGCAGAAGTGGAGACTGGCAGCAAGGGCAAGGACAAGAAGATGAAGGCACTGAA
AAATGTGGATGCCAATGGTGGAGCCGCAGGTGTGAAGTACAAGAGGAAAAGGAAAAACAA
GGATCAGACTGAAGATGTTGTGATGGAGGAAGCACAAGAGGTGACTGAGAAGAGGAGGAA
GGAGGAGGCTGCGCCTTCCGTAGAGGTTTCTGCCGGTGAGGACCTGAAGACCCCAAAGAA
GGGCAAGGATAAGAAGCGTGCATTGGACATGGAGGTGGAGGATGCCAGTCCGGCAGAGAA
GAAGGGTAGGAAGAGTGAGGAAGCCAGCTACAAGAAAAGTAAGGGCAAGAAAGAAGGTAG
CAAGCAAGTACCTGAGGAGGTGGAGGTGGAGGATGCCAGTCCGGCAGAGAAGAAGGGTAG
GAAGAGTGAGGAAGCCAGCTACAAGAAAAGTAAGGGCAAGAAAGAAGGTAGCAAGCAAGT
ACCTGAGGAGGTGGAGGATGTTGGCAGCAAGAAGAACAAGGGGAAGAAGGGAGAGGTCAA
GGAGGGGAAGAAGAAGAAGAGCATGAAGGGTGATTCTGATGATGGTGAAGTCCTCTTGGA
TGGGGAAAGCACTCCTGCTGCTGTTAAAGTTGACAAGGAAGAGAAGAAGAGCAGGGGGAA
GAAATCAAGTGGCGATAAGATGAAGAGATCCAGGGCAAGGGTCTAAGGTTGTATTTGGTT
TTCCTGAAATTGCTGCTTGTCAGTTGAATGCCAATCTCTTGAATTGAGACCAAGCTGCAT
GTTCTATGCATAGATAAGCTGGTAAATCCGATTACTGTCAGCTGTGAGATGCAATCATTG
TCGAACCTGCTTCTTTTTTGTATTAGGAGATTGCACTTAAGATTATACTGCTGAGTGTAA
TACGGTGGTGCCGCGGCAGAATATCTGGAGTAGTTTCTTCAGATTTTGGTAGCTTATAAA
CAACCTTTGGGGTAAAGTTATGGTGGAACTGTTTCTCTTTTCATCTTTTGTAATCCATCT
GCTAGTATGCAACAATTTTGTATTGGTCTGATACTATGCTTGTGTTGGTCTGTCTTCTCT
AATGCACCCCTCTAATAGTAGCTTCTTGATGATTCTGGGTAGCAGGTGTACTATGTGATT
TGACAGTCATCTAATAGTAGTCTCATCTTTGNCNGANNAAAAAAAAAA

Homology of Contig U35_4245 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48422.1	416	2e-124	protein\|60S ribosomal protein-related, putative, expressed
Brachypodium v1_2	Bradi2g16930.1	436	3e-163
Arabidopsis v10	None