barSeed - Barley Seed Development Database

Probe CUST_3095_PI390587928

Source Contig U35_6599

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3095_PI390587928	Hv_44K_v2	TTTCACGGCTCCTTCGCACGAAGCTTATTAGTATGCTGCCCATGGTCACCGAGGCGTGGA	214	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43206.2	1679	2e-24	361 - 420	100	60 / 60	plus	ABC07486
MLOC	MLOC_43206.1	1645	2e-24	361 - 420	100	60 / 60	plus	ABC07486
MLOC	MLOC_43206.3	1690	2e-24	361 - 420	100	60 / 60	plus	ABC07486
MLOC	MLOC_43206.4	1656	2e-24	361 - 420	100	60 / 60	plus	ABC07486
JLOC1	JLOC1_27919.4	1693	8e-25	360 - 419	100	60 / 60	plus
JLOC1	JLOC1_27919.3	1474	8e-25	360 - 419	100	60 / 60	plus
JLOC1	JLOC1_27919.2	1648	8e-25	360 - 419	100	60 / 60	plus
JLOC1	JLOC1_27919.1	1682	8e-25	360 - 419	100	60 / 60	plus
Harvest21	ABC13388	401	3e-25	215 - 274	100	60 / 60	plus
Harvest35	U35_6599	402	3e-25	215 - 274	100	60 / 60	plus

Contig Sequence (402 bp)

>U35_6599 402 Hv_44K_v2
CAGAGCGAATCCCATACTCTTCCTCCACTCCTCTCCCCCAAATCGAGCTCTGCCCCGAAG
CGGAGGAAGGTCTCGCCGCCATGATGCGAAGGAAGGTCTCACCGTCCCGTCGATTTGGAT
GCATGAAGCAGTCGAGCTCCACCCCGAAGTGGAGGAAAAGATACGTACACGGTCGTCGAT
ATGGGCACATCTAGCCATGGAGGGCTCGCCCCTCTTTCACGGCTCCTTCGCACGAAGCTT
ATTAGTATGCTGCCCATGGTCACCGAGGCGTGGACGCTCGCTGGGTGCGGCGGGGCGGCG
GCGTCCAAGCCGGCCGCGGCGGTGCAGGAGGTGCCCGCGCTGCTGCATCCTGTCGCCAAG
AAACCCATCTCGTTCTGAGGGGTGGCCACGGTGAGCAGCGCA

Homology of Contig U35_6599 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None