- Probe CUST_30953_PI390587928
- Source Contig U35_4252
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30953_PI390587928 | Hv_44K_v2 | CAGCTGCACTTGATCTGTGCAAACACAACTTACAGCAATGGAAGAACCTTATGCATTAAA | 558 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_65547.1 | 2297 | 2e-23 | 1052 - 1109 | 100 | 58 / 58 | plus | ABC09613 ABC11375 ABC11376 |
| MLOC | MLOC_65546.3 | 2071 | 2e-23 | 670 - 727 | 100 | 58 / 58 | plus | ABC09613 ABC11375 ABC11376 |
| MLOC | MLOC_65546.2 | 2334 | 2e-23 | 941 - 998 | 100 | 58 / 58 | plus | ABC09613 ABC11375 ABC11376 |
| JLOC1 | JLOC1_43135.1 | 1807 | 1e-23 | 1187 - 1244 | 100 | 58 / 58 | minus | |
| JLOC1 | JLOC1_43134.4 | 2715 | 1e-23 | 1321 - 1378 | 100 | 58 / 58 | plus | |
| JLOC1 | JLOC1_43134.3 | 2216 | 1e-23 | 822 - 879 | 100 | 58 / 58 | plus | |
| JLOC1 | JLOC1_43134.2 | 2069 | 1e-23 | 675 - 732 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC09613 | 633 | 3e-25 | 560 - 619 | 100 | 60 / 60 | plus | ABC09613 |
| Harvest35 | U35_4252 | 632 | 3e-25 | 559 - 618 | 100 | 60 / 60 | plus |
Contig Sequence (632 bp)
>U35_4252 632 Hv_44K_v2 TGGTCAGGCAAATGGGGTGTATGTCAAGGTGCTTGATCTCCGGTTCTGTGATTTCACAAA TGATAAAAGTAATCTTAAAGGCAAGACTCTGTCTGCGGCTTTGATGTCAGGCGCAAAGTT TGATGGTGCTGACTTGACAGAAGTTGTCATGTCCAAGGCCTATGCTGTTGGTGCAAGTTT CAAAGGCACGAACTTCACAAACGCAGTGATAGACCGTGCCAATTTCGGAAAAGCCGACCT GGAAGGTGCAATTTTCAAGAACACTGTCTTGTCGGGATCAACCTTTGATGAGGCTAATAT GAAGGATGTGGATTTCGAGGACACACTCATTGGCTACATTGACCTTCAGAAGCTTTGCAG AAACACCAGCATCAACGAAGGCACAAGATTGGAGCTGGGATGCAGGTGATTCAATCACAG CTGCTGCACTTATGGTAGCATCGACGTCCATCGTCCGGTAAAGATTAGTAAGTCAGGTCT GTTATAGAGCACGAGCAGGATGACAACCCCACCCCCACCCCCCTCTCCGAACATATGTAT ACCGTAAATATCATACCACAGCTGCACTTGATCTGTGCAAACACAACTTACAGCAATGGA AGAACCTTATGCATTAAAAAAAAAAAAAAAAA
Homology of Contig U35_4252 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g35810.1 | 237 | 3e-72 | protein|thylakoid lumenal protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g30150.1 | 230 | 3e-81 | |
| Arabidopsis v10 | AT5G53490.3 | 250 | 4e-73 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:21723488-21724621 REVERSE LENGTH=250 |