barSeed - Barley Seed Development Database

Probe CUST_30950_PI390587928

Source Contig U35_4255

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30950_PI390587928	Hv_44K_v2	TTTGGGGATTACAACACTCTATCCAGTCTTCAAAAACCGTATAACTTCCAATTCGCCAAA	650	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.420	2.620	1.323	0.641	0.136	0.160
Raw	276.952	460.331	203.377	158.846	11.557	15.451

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62837.1	1007	2e-24	334 - 393	100	60 / 60	minus	ABC10542
JLOC1	JLOC1_41148.1	667	8e-25	35 - 94	100	60 / 60	minus
Harvest21	ABC10542	684	3e-25	611 - 670	100	60 / 60	plus	ABC10542
Harvest35	U35_4255	724	3e-25	651 - 710	100	60 / 60	plus

Contig Sequence (724 bp)

>U35_4255 724 Hv_44K_v2
CCTAGGCAAGCACGCAGCCGCCGCGTATCCCCGACCGCCATAGCCGGGGCTCTACGTTTC
AGCCGAAATCCGAGAATCCCCGTTGCCGAACACCACAATCCGCGGCGACTGCTCGATCCA
AGAAGGTGAGAAGATGACGCAGAAGCAGACCATGTTCAAGGGGCAGACCAAGAAGAAGTC
CATCCCTCCCAGCCGCCATGGCAAGGCGCCCCACATCCGTAAAGGGAAGAGGGCCGTGAA
GCCGACCAAGTGCACCAAGGACATGGACGCCGACAAGGACCTCACAAAGTTCATCAACCA
CGCGAACGAAATAAAAGCTGCAAATAAAGCTAGCAAAGAAGGTGGCGACCTCAGCATAGT
GAAGTCCGACGCGGATACTTCCAACTCAAAGCAGTAGGCTGGAGGCTTATGCTACTTACT
GTGACGCACAATATAAGATGAGTGTAAAATGATCCATATATCATGCTTTCATGAAGAAAT
TAGACTCCAAATCGATGGTTAGAAGAGTATGTTTAGTTCACCCTACATCTGTTGTAATCT
GTTACCAGTTCTGTGAAATCCAAGTTTTCTCCTGTGAAAAAAAAAAAAAAAAACTGAAAG
GCTAGATTATCTGTAGCCTCTCCAAAAAACTTCTCCTAAAAGACTGTCGCTTTGGGGATT
ACAACACTCTATCCAGTCTTCAAAAACCGTATAACTTCCAATTCGCCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_4255 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g10260.1	88	2e-53
Arabidopsis v10	None