barSeed - Barley Seed Development Database

Probe CUST_30941_PI390587928

Source Contig U35_4264

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30941_PI390587928	Hv_44K_v2	ATCAGCCACAAAGACAGGCTAACACTAACACCACTTCAATTTGTTGTGATTCCCTTCAAA	948	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.547	1.593	1.173	0.976	0.415	0.379
Raw	310.811	511.046	325.024	417.733	63.612	62.672

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359548	1080	3e-22	1023 - 1078	100	56 / 56	plus	ABC10044
MLOC	MLOC_69900.2	3940	3e-22	30 - 85	100	56 / 56	minus	ABC10044
MLOC	MLOC_69900.1	735	3e-22	221 - 276	100	56 / 56	minus	ABC10044
JLOC1	JLOC1_46347.1	854	1e-22	31 - 86	100	56 / 56	minus
Harvest21	ABC10044	984	3e-25	14 - 73	100	60 / 60	minus	ABC10044
Harvest35	U35_4264	1021	3e-25	949 - 1008	100	60 / 60	plus

Contig Sequence (1021 bp)

>U35_4264 1021 Hv_44K_v2
AGTACCCCCTGCTTATCCCCTCCCGAGTCCGTCGCCTCCTCGGCATTCCGTCGAACACCA
TGACGAGCGTGGCGGCGGCGGTCGCCCTCCTCCGCCTCCCTCTCGCCCGCCTCTCCTCCC
ACCTCCGGTCCCTCCCTGCCCCTCCCGTCCCGTCCGCTCGCCTCCGCCTCTCCGCCCCCC
ACCGCCCTCTCTGCTCCCTCCTCACCGGCCACGGCCTCGCCGTAGCGGCCGTGTCCGAGG
CGGTGGCCGCGGCGGACGAAGAAGAGTTCGAAGCGACGGAGGAGCAGCAGGAGGAGGAGG
CGCCCCCCTCCTTCGTGCTCCCGCGGCTGCCGCGGCCGAAGCTCGACGTGAAGGAGCGGA
AGGAGCTCGCCTCGTACGCGCACGGCCTCGGCAAGAAGCTCAAGTCGCAGCAGGTCGGGA
AGGGCGGCGTGACGCCCAACCTCGTCACCGCCTTCACGGACAACCTTGAGTCCAACGAGC
TCCTCAAGCTAAAAATTCATGGGAATTGCCCTGGAGAACTACCTGATGTGATACGACAAC
TTGAGGAGTCAACCGGATCCATTGCTGTCGACCAAATTGGCCGCTCAGTTATTCTATATA
GGCCTAGCTCCAGCAAGATGAAAAAGAGGGAAGAAGTTGCTAGAAACAGGGAAGAGTATG
CAAGAAACAATCCGAGGTTTGGAAAATCTGAAAATGCATTTGAAGAACGTCCTAGGAACA
ACAGCGCAGGCAGGAGATTCGTAAAATCTGGGTCGACATTTAGGACTCAACAGAAGCGAA
GACCGGTAGCATCCAAGGGGTCGTCATACAGCCGAGGGTAGCAGCATTGAAAATAACAGA
TTGTTTTTCTTATTGTTTGGAGGAATCATGTAAATTTTAGACCAACTAGTAGTTGTATAA
TGGACATTAGTGTTTAGTTTGTGCTAGTAAACCATGATTCCAAGTCTCATCAGCCACAAA
GACAGGCTAACACTAACACCACTTCAATTTGTTGTGATTCCCTTCAAAAAAAAAAAAAAA
A

Homology of Contig U35_4264 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36860.1	253	2e-80	protein\|CRS1/YhbY domain containing protein, expressed
Brachypodium v1_2	Bradi3g30600.1	255	1e-106
Arabidopsis v10	None