barSeed - Barley Seed Development Database

Probe CUST_30940_PI390587928

Source Contig U35_4265

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30940_PI390587928	Hv_44K_v2	TCGTAGACATGTACTCCCTCCGTCCCATATTAAATGTAGCTAGGGTTAAAACTTAAAAAA	1109	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.892	1.699	1.224	0.775	0.858	0.796
Raw	949.146	1220.605	850.665	773.707	316.611	332.192

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_42075.3	1524	5e-22	1048 - 1102	100	55 / 55	plus
JLOC1	JLOC1_42075.1	1620	5e-22	1144 - 1198	100	55 / 55	plus
Harvest21	ABC09976	1175	3e-25	1110 - 1169	100	60 / 60	plus	ABC09976
Harvest35	U35_4265	1175	3e-25	1110 - 1169	100	60 / 60	plus

Contig Sequence (1175 bp)

>U35_4265 1175 Hv_44K_v2
CTCCGCTCCTCCTCAGCTCAGCTCAGCTCAGCTCGCTCCCCCCAAACTGCCACGCCATGG
AGGCGGTCGCCGCCCTCGACGCCCGCGCCCTCTTCTCCCCTCCAACTGCCCTCCCCTCCT
CCCGCCTCCGTCTCGCCGCCCGCCCGCGCGCGGTCGCCGCCTCCCCCGCCTCCGTCGCCG
CCACCCCCAAGCAGCGCTTCCTGACCCCCCACCCGGACCCCGCCGGTGGCCGCGGCGCTA
GGGATGTCGTCGCGATGGTTATCCCGTTCCTGAGGGGAACAGCATTTGAGCAGCCGCCGC
CGGATTTGGCCTCGTTCCTTTACAAGAACAGGATCGTATACCTGGGTATGTGCCTCGTGC
CGTCGGTGACGGAGCTCATGCTCGCCGAGTTCCTCTACCTTCAGTACGAGGACGCAGAGA
AGCCCATCTACATGTACATCAACTCCACCGGTACTACCAAGAATGGCGAGAAATTGGGTT
ACGAGACGGAAGCTTTTGCTGTATATGATGCCATGAGGTATGTCAAAATTCCAATTTTCA
CACTCTGTATTGGCAATGCATGGGGAGAAGCTGCTTTACCCTTGGCTGCTGGTGCTAAAG
GTAACCGTGCTGCACTTCCATCATCGACGATAATGATGAAGCAGCCAATTGGTCGATTTC
AAGGTCAGGCGACAGATGTTGACATAGCAAGAAAGGAAATACGAAATGTGAAGATAGAAA
TGGTTAAGCTGCTGTCAAGACACATAGGTAAACCAATGGAAGAGATTGCCCGAGACATCA
GGCGGCCTAAATACTTCAGCCCAAGTGAGGCAGTGGATTACGGTATCATCGACAAGGTGC
TGCACAATGTGAAAAGCCAAACAGATGCCGGCCTCGTGTCCGAAGTCAAGAAAGAATTAA
TTTAACAACGGGGCGTTACACGTAGGCGTATTTTTGTAGCAAGATTTGGATAGGCAAATG
CAATGCAGAAGTGTTAGTCTGGGGAATTCTGGTACGGGATTGCCGTTTTGATTTCATGGC
TCATTGATGCTCTTGTTTCTATGGTTGGGTTGATCTGGTTCCTTGAGCTGTGATTCCAAA
TGGTTCCACTTTCTAGTCTTGTTACTGTGTCGTAGACATGTACTCCCTCCGTCCCATATT
AAATGTAGCTAGGGTTAAAACTTAAAAAAAAAAAA

Homology of Contig U35_4265 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16530.1	299	1e-145	protein\|OsClp1 - Putative Clp protease homologue, expressed
Brachypodium v1_2	Bradi2g10278.1	294	3e-168
Arabidopsis v10	AT4G17040.1	305	3e-117	\| Symbols: CLPR4 \| CLP protease R subunit 4 \| chr4:9586740-9589297 REVERSE LENGTH=305