barSeed - Barley Seed Development Database

Probe CUST_30935_PI390587928

Source Contig U35_2503

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30935_PI390587928	Hv_44K_v2	GCATGCAGGTTTATTTTACCAGTTTGTCACAAGGCCGTTATTTGATGAATTAATGAGATT	771	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250671.1	1991	2e-24	1925 - 1984	100	60 / 60	plus	ABC06262
JLOC1	JLOC1_34543.1	2280	8e-25	2026 - 2085	100	60 / 60	plus
Harvest21	ABC06262	2162	3e-25	1957 - 2016	100	60 / 60	plus	ABC06262
Harvest35	U35_2504	2162	3e-25	1957 - 2016	100	60 / 60	plus
Harvest35	U35_2503	855	3e-25	772 - 831	100	60 / 60	plus

Contig Sequence (855 bp)

>U35_2503 855 Hv_44K_v2
GAGCGCTTTTTGCTCTAGCTGAGAGACAGATTCCTGCGTCGATGGCGGGAGTTGCACCTG
CAGCTGTCGTTTCCAATGGAAAAAGAGCAATGGAGGATGAAATTGGCCCTGATGGGAAGA
AGATACGCCCTGGTATCAATCCTGTCATGATCGATGAACTAACAGAGTGTAATACCATGC
TTTCTGCTCAGCGTAAGAAACGGCAGGTACCACCAAGTTTGGCATCAATTGATGAACTAG
AGAAATATACTCAGATCTCTAGTCATCCACTCCACAAGACAAACAAGCCAGGCATTTTAT
CTATGGATATCCATCCGTCAAAGGACATAGTTGCAACTGGGGGTATCGATACGAATGCAG
TGCTATTTGATAGGACATCTGGTCAAATCCTGTGTACACTTGCTGGTCACTCCAAGAAGA
TAACCACTTTGAAATTTGTTCCACGGGACGAGCTTGTGGTAACTGGATCAGCAGATAAGA
CTGTTCGGATTTGGGCTTCCTGGAGATGATCAAATGGATGATGATGCAAAATCATCGGCC
GAGTGAGGAAATGCAGTGTACCTGGTTTTTACTTGTTTGTTGCTCCCAGCGCTCTCTTTT
GACAGTGGATGGATGGGTTGCGTATGAAGAAAAGCAGGGTCCTCAGGGAGCAATGGCGTA
GGCTTCCGCCGATGTAAACAGACCGTGGCATTATTGTATTGTAGGTTTCACTAATTTTCT
AATGAGGATATAATTTGTTTTGAAGAGGAATACAATCTCAAAGGGCCACGGGCATGCAGG
TTTATTTTACCAGTTTGTCACAAGGCCGTTATTTGATGAATTAATGAGATTTAATCTGAA
AAAAAAAAAAAAAAA

Homology of Contig U35_2503 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g32880.1	498	3e-97	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi3g28280.1	528	5e-100
Arabidopsis v10	AT2G33340.1	525	5e-64	\| Symbols: MAC3B \| MOS4-associated complex 3B \| chr2:14126584-14131000 REVERSE LENGTH=525