barSeed - Barley Seed Development Database

Probe CUST_30934_PI390587928

Source Contig U35_2504

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30934_PI390587928	Hv_44K_v2	ACAATGTCAGTGTTGTGAATCCGTCTTTGCAACAGAGTCCATGTTCAGAAAGAATAAGTG	2102	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.438	1.464	1.130	0.801	0.251	0.279
Raw	1693.397	2704.397	1813.110	2051.083	226.165	271.533

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_34543.1	2280	4e-23	2162 - 2222	98	60 / 61	plus
Harvest21	ABC06262	2162	3e-25	2103 - 2162	100	60 / 60	plus	ABC06262
Harvest35	U35_2504	2162	3e-25	2103 - 2162	100	60 / 60	plus

Contig Sequence (2162 bp)

>U35_2504 2162 Hv_44K_v2
ATTAAAACCCTAGCGGCTACACCTTCGTTCCCCGCCGCCTCCTCCACCCATCGCCGGCGC
GCCGCCACTGCCACCGCCAGCGAGATTGCGACCTGAGAGGTCCAGCGTGCTCGCGCTCTT
TCCGGCTCTACCTTCGCCGCGGCCACTATGATCTGCGCAATCTCCGGCGAGGTGCCTGAT
GAGCCGGTGGTATCAAAGAGGTCGGGGCTCCTCTTTGAGCGGCGGCTCGTCGAGCGCTAC
ATTGAGGACCACGGGAAGTGTCCAGTCACGAAGGAGGAACTCTCCATGGACGACATCGTG
CTGGTGAAGACCAACAAGGTCGTGAGGCCTAGGCCTCTGCAGGCTGCAAGCATTCCCGGA
CTCCTTGGAATCTTTCAAAACGAGTGGGATGCCCTTATGCTTTCTAATTTTGCTTTGGAG
CAGCAGCTTCACACAGCAAGACAAGAACTGAGTCATGCGTTATACCAGCATGATGCTGCC
TGCCGTGTTATAGCCAGATTAAAGAAGGAAAGAGATGAGTCTAGAGCGCTTTTGGCTCTA
GCTGAGAGACAGATTCCTGCGTCGATGGCGGGAGTTGCACCTGCAGCTGTCGTTTCCAAT
GGAAAAAGAGCAATGGAGGATGAAATTGGCCCTGATGGGAAGAAGATACGCCCTGGTATC
AATCCTGTCATGATCGATGAACTAACAGAGTGTAATACCATGCTTTCTGCTCAGCGTAAG
AAACGGCAGGTACCACCAAGTTTGGCATCAATTGATGAACTAGAGAAATATACTCAGATC
TCTAGTCATCCACTCCACAAGACAAACAAGCCAGGCATTTTATCTATGGATATCCATCCG
TCAAAGGACATAGTTGCAACTGGGGGTATCGATACGAATGCAGTGCTATTTGATAGGACA
TCTGGTCAAATCCTGTGTACACTTGCTGGTCACTCCAAGAAGATAACCACTTTGAAATTT
GTTCCACGGGACGAGCTTGTGGTAACTGGATCAGCAGATAAGACTGTTCGGATTTGGCAA
GGGACTGAGGAGGGAAACTACAGTTGCATCCATACATTGAAAGATCATACCGCTGAGGTT
GAAGCTGTTACTGTGCATGCGACTCAGAAGTACTTCGTGACCGCTGCCAAGGATAATACT
TGGTGCTTCTATGATATTTCAACTGGGTCTTGCCTCTCACAGGTTGGCGAGGCTTCAGGA
CAAGAGGGATATACATCTGCATCTTTCCACCCAGATGGTCTTATCCTTGGAACAGGAACT
ACTGAAGCCGTTGTCAAAATTTGGGATGTGAAGACTCAGTCCAATGTTGCAAAGTTTGAG
GGGCATACTGGACCTGTTACTGCTATGTCCTTCTCTGAAAATGGTTACTTCCTGGCGACT
GCTGCTCTTGATGGTGTCAAACTTTGGGATCTAAGAAAATTGAGAAATTTTAGGACTTTC
TCGCCATATGATTCGGACACGCCGACAAATTCTGTGGAATTTGATTTTAGCGGCACCTAT
CTTGCTGTTGCTGGTTCAGATATTAGGGTATACCAAGTAGCTAATGTCAAGACCGAATGG
AATCTTATCAAGACCTTACCAGATGTATCAGGAACAGGGAAAGTGACCTCTGCGAAGTTC
GGCACTGATGCTAAATATATCGCCGTCGGCTCTATGGACCGTAACCTGAGGATATTTGGG
CTTCCTGGAGATGATCAAATGGATGATGATGCAAAATCATCGGCCGAGTGAGGAAATGCA
GTGTACCTGGTTTTTACTTGTTTGTTGCTCCCAGCGCTCTCTTTTGACAGTGGATGGATG
GGTTGCGTATGAAGAAAAGCAGGGTCCTCAGGGAGCAATGGCGTAGGCTTCCGCCGATGT
AAACAGACCGTGGCATTATTGTATTGTAGGTTTCACTAATTTTCTAATGAGGATATAATT
TGTTTTGAAGAGGAATACAATCTCAAAGGGCCACGGGCATGCAGGTTTATTTTACCAGTT
TGTCACAAGGCCGTTATTTGATGAATTAATGAGATTTAATCTGAAAAAAAAAAAAAAAAA
GTCCCCTCAGCAGAAGTTAGATCTGGTCCCACCAATGGTTTAACCCTGTCCTTGTTATTG
CAACAATGTCAGTGTTGTGAATCCGTCTTTGCAACAGAGTCCATGTTCAGAAAGAATAAG
TG

Homology of Contig U35_2504 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g32880.1	498	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi3g28280.1	528
Arabidopsis v10	AT1G04510.1	523	\| Symbols: MAC3A \| MOS4-associated complex 3A \| chr1:1226749-1230592 FORWARD LENGTH=523