barSeed - Barley Seed Development Database

Probe CUST_30923_PI390587928

Source Contig U35_2515

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30923_PI390587928	Hv_44K_v2	TGTAACTCAAAGTTAGGCACTCAGTAGTCAGTACTGATATTTACCCTATACCAAATTTTC	624	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56342.1	1705	3e-21	142 - 201	97	58 / 60	minus	ABC06049 ABC06051
JLOC1	JLOC1_36431.1	1880	2e-21	1448 - 1507	97	58 / 60	plus
Harvest21	ABC06051	687	3e-25	4 - 63	100	60 / 60	minus	ABC06051
Harvest21	ABC06050	1927	6e-22	1821 - 1880	97	58 / 60	plus
Harvest21	ABC06049	909	6e-22	221 - 280	97	58 / 60	minus	ABC06049
Harvest35	U35_2515	687	3e-25	625 - 684	100	60 / 60	plus
Harvest35	U35_2516	1063	6e-22	630 - 689	97	58 / 60	plus

Contig Sequence (687 bp)

>U35_2515 687 Hv_44K_v2
GGAAAGCACACAGGAAGTGCAGGTGAACCCAACAAGCCTATCCCAATACAGGGACATCCA
GAGAAAGATTGTTGAGTTTATCAGAAAGAGATACCATATTCTAGAAAAATGCTTGGACAT
TGAATATGCTGTGATAAAAACGAAAACTCCTGTTCCTGATGATCTTACTGAACAAAATGT
TCCTATGGGACATAGCCCAGCTGTTCCAGATATCAGTGAAGTGTTGAGAGAACTTCCCCC
TCTTGTACCAATCTATGTGTGGTGTGCTTGAAGACAGCGGTGCACGTGCACTCAATTCGT
TCTGCGGTGACAAGGCAGCTTCCGCGAGTCTAGCCAACAGCCTCCATCAGTTTGAGAAAG
TATGTGAGGACGTTGATCGGGTCTTGAGAGTCCAAGAGAACGGCGCTGCTACCCCCAAAG
AGGAAGTGGTAGATGCCATCGTCGAAGAAGCCAAGCCTCCACAAGTGCCTCCACAAGACG
CAGGCGCCGTGGCGGCAAATGGTGTCGGCCCTTCGACTGTAAAGCCGGAGGACAAAATGG
AAATCGATGGTTAATGTGTAGGGATGAAAACTGAATCGAAACCCCCTTCAGTTTAGTTAC
TAAACTGGTTCTAGTCTACCTTGTTGTAACTCAAAGTTAGGCACTCAGTAGTCAGTACTG
ATATTTACCCTATACCAAATTTTCCTG

Homology of Contig U35_2515 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g08480.1	1251	1e-55	protein\|CHD3-type chromatin-remodeling factor PICKLE, putative, expressed
Brachypodium v1_2	Bradi1g47367.2	1335	4e-72
Arabidopsis v10	None