barSeed - Barley Seed Development Database

Probe CUST_30910_PI390587928

Source Contig U35_2528

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30910_PI390587928	Hv_44K_v2	CTGGTTGTTCTGCCCCATGATTCTATTATTGCTATGATGATTGCTGTTAAGCTTTAAAAA	1542	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.885	1.312	1.608	1.266	0.545	0.486
Raw	6128.370	14000.580	14791.933	18156.810	2779.980	2681.460

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11977.1	4287	9e-22	1391 - 1445	100	55 / 55	plus	ABC07281
JLOC1	JLOC1_7995.1	1611	5e-22	1392 - 1446	100	55 / 55	plus
Harvest35	U35_2528	1614	3e-25	1543 - 1602	100	60 / 60	plus

Contig Sequence (1614 bp)

>U35_2528 1614 Hv_44K_v2
TCGAGCACTGTTGGCCGGACACACTCGACCCACACAGCCAGGCGCACACACTCGATCCCA
CACACAAGCGCACACTCCCTCCCTCTCGGCAGCGCCGCGAGCTAGCTAGCGAGGTTGGTG
GAGCCGCTCCACGGCGGCGGGGCCAGGCGAGGCCGCGAGGTCGGTCGGGGAGCCGCGCGG
CAGCAGCAGCAGCAGCGGAGCGGGGCGGGCCGAGCTCGTTCCGGCCACCCCTGCGGCCAT
GGCGGCGAGCGGCGAGGGGGGCGGCGACGCGTCGGCGGCGGCCCGGCGCCGGTGGGATCT
CACCAGCAAAGGGGCGGAGACCATTCCAATGGTGAAAGAGGCTGCGGAAATCTCCACGGA
CGAAGAATCAGATGGTGTTGTTATATGCCCACCAGATGAGAACACTCGTGGTTGCGAGGA
AGTTGTTAGTGGCAGTGATCATGATAGTTCTCCAGAGGGCCAAGTAACTTGTGTAGAACC
GGCCATAGACGGGGAAACAGGGGAAGACAAGCTTGTAAACCAAGATTCACTGAAGTTGAT
CGATCAAGAAATGTCTGCTCTGCCTAAGTCACCAACAAAGCCTAGTATGTCTGGATCAGA
GAGGTCTAAGCGCACTGTTCCTCAACCATTTGCACTTTCAACTCAAAGAAGGGCTTCTGG
TGGAGGAAATGGCGGTGTGGCTCATCCATCCAGTAACGGAGAAAAATCTGGGCAAGGAAG
CAGTGCCTCTCCAGCAAGCATGATAAAGAAGAGTACTCTGGTGACACCCAAGAAGATGTC
GCAACCTGGCCATACATTTCAACCTCAAGATGACGACTCCTGTTCAGTGACTTCTTCAAC
CACAGCTTCGGCACGAGCTGGCAGAACTAAGACAACTGTTGCCTTTGCTCCTACATTTGT
ATGTGACGACCGTGCTGACAAGAGGAAAGAGTTCTACACGAAATTAGAAGAGAAGCACAA
AGCTTTGGAGGCTGAGAAGAATGAGGCTGAAACAAGGAAAAAGGATGAGCAAGAAGCGGC
TTTAAAACAACTAAGGAAGTCCTTGGTCATCAGAGCAAAACCCATGCCAAACTTCTACCA
AGAAGGGCCCCCTCCAAAGGCTGAGCTTAAGAAGGTGCCTCCAACCCGTGCCAAGTCACC
AAAGTTTACAAGGAGAAAGAGCAGCGGCGATGGCGCACCAGCGACCCCAGAGGCGGCGGC
GGCCATCAGCGCAGGATCCCACCGGTCGCATCGTCACAGCATGGGGAATCCTCCTAAAGA
CGCCAACAAAGCACAGTGCTCGCCGAAGAATGGCGTGGGCGCCAAAGCCAGGGCCGTCAA
ACCCGTGAGCTGAAGGCCCTCGAAAGAAGGCCGTGGAGCGGCCCGAGCTCGAATGTAGCT
GTACAAACCCTAACTCGACGTGTGTCTTTGCTTTTCTGGCATTTCGCGGTTGAGTTAATT
CATGTAAGGAGTCAAGTCACCTGGTCTGGACGAACTAATTTGAGAGTCGAACCTTTGGAT
TGCTCTGCTGGATGTTTGCAGATTGTGCCGAGATCCGTCTTGCTGGTTGTTCTGCCCCAT
GATTCTATTATTGCTATGATGATTGCTGTTAAGCTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2528 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g58480.1	360	9e-144	protein\|seed specific protein Bn15D14A, putative, expressed
Brachypodium v1_2	Bradi1g05320.1	395	1e-164
Arabidopsis v10	None