barSeed - Barley Seed Development Database

Probe CUST_30906_PI390587928

Source Contig U35_2532

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30906_PI390587928	Hv_44K_v2	TCGCCTGAACGATGAAAACTGTTGTTGTGGCCTGTGTTTTTATGCATCTCTGCTTGTCTG	1073	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.090	1.285	1.276	1.150	0.677	0.631
Raw	14398.637	25646.387	22675.567	30873.067	6726.750	6740.800

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7011.1	1666	2e-24	1 - 60	100	60 / 60	minus	ABC05897
MLOC	MLOC_7011.2	1184	2e-23	1 - 58	100	58 / 58	minus	ABC05897
JLOC1	JLOC1_4617.4	1315	8e-25	1120 - 1179	100	60 / 60	plus
JLOC1	JLOC1_4617.3	1253	8e-25	1058 - 1117	100	60 / 60	plus
JLOC1	JLOC1_4617.2	1812	8e-25	1617 - 1676	100	60 / 60	plus
JLOC1	JLOC1_4617.1	1766	8e-25	1571 - 1630	100	60 / 60	plus
Harvest21	ABC05897	1175	3e-25	1074 - 1133	100	60 / 60	plus	ABC05897
Harvest35	U35_2532	1175	3e-25	1074 - 1133	100	60 / 60	plus

Contig Sequence (1175 bp)

>U35_2532 1175 Hv_44K_v2
GCTCCCACTCTCCGTCTCCTCGCCCAGCGACAGCCAACAGTGAGCAGCGGGGCGCGTGCG
GCGTCGGTGCGGAGAGCGACCCGACCGACTCCGGCAGGCGCCTCCCGATCACCACCGCCT
TCTCCTCCGCGGGCAGCGGCAATGGCGAACAGGGGAGGGAAAGGGTCGTATCCCCCGTCC
AAGTCAGGAGCACCGAACGGAAGGCAGAACCATTCTAAAGATGTTATTGACCTTTCTGAT
TCTGATTCTGATTCTGATGATTTTTTCGAAGAAGAGGCTCCCCCCACACACTCCAAGTCA
AATGGGAAAGCTTCATCTGATAGCCTAAAAACTGGTGGAAAGGGTTCATCCTTTTCTAAT
GGGGAAGGTAGCAAAGGAGGGAAGGCATTTAGTGCTGGGAAAGGTGGGAAGGCCTCCGCA
TCAAATGCAAAGCCTGCAATGTCTGATGCAGAACTAAAGCTTCAGCTTGATATGTCTCCA
AATTCTAAACTGTTAACGAACTGTGAAGTAGCAGAAATGTTGCAGAAAATTCACGAACAT
ATGGCTATCTTATCAGAGGATCCAAAGATAAAAATTCCCGAGTCGTTCGACAAGGCCTTT
CTATATGCAAAAGAAGGGAATCACTTCACCTCTGCGAAGTTGGTGAAAGAAATCCTGGAA
CCCCTTAAAGACTATGGTGTTAATGATGGCGAGATATGCATGATAGCAAACATTGGGCCT
GAGACCATTGAAGAGGTTTATGCACTCATACCGTCTCTCAAGGCCACTAGGTCGATCAAT
GAAGGCAAGATCGCGGAGGCCCTTACTGCCCTTGCTAAAATAAAAGCCTCCAAGTGAACC
TCAGCTGTGATAAGTATATGGCTGATCGAGCAATGAAGAATCTGGAACGGGGGTCTCTCT
GGTGTATGGATGGATGTTCATTGAAATCGACTTCTTTCTTTGAGAGCCGAAATCAAGTTG
TCTGTATGTAGAAGCCGCACCATGCACCCGTGTGCCAGCTCTAGGTCTGGCTGGTTGAAC
CTTGACTTTTGGAAACTAGCTTGTCTAGCTGCCGGTTTACCCGATGGCCTGGCTCGCCTG
AACGATGAAAACTGTTGTTGTGGCCTGTGTTTTTATGCATCTCTGCTTGTCTGTTTAAAA
AAAAAAAAAAAAAATCGANGAGGGGCGCGGTACCC

Homology of Contig U35_2532 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49150.3	232	9e-74	protein\|RNA polymerase Rpb4, putative, expressed
Brachypodium v1_2	Bradi3g56497.3	250	3e-82
Arabidopsis v10	None