- Probe CUST_30904_PI390587928
- Source Contig U35_2535
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30904_PI390587928 | Hv_44K_v2 | ATGCAAAAGAAGAAAATCACTTCACCTCTGCGAAGTTGGTGAAAGAAATCCTGGAACCCC | 839 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_59970.1 | 908 | 2e-24 | 193 - 252 | 100 | 60 / 60 | minus | ABC05897 |
| MLOC | MLOC_59970.2 | 1406 | 2e-24 | 192 - 251 | 100 | 60 / 60 | minus | ABC05897 |
| MLOC | MLOC_7011.3 | 1232 | 3e-21 | 496 - 555 | 97 | 58 / 60 | minus | ABC05897 |
| MLOC | MLOC_7011.2 | 1184 | 3e-21 | 468 - 527 | 97 | 58 / 60 | minus | ABC05897 |
| MLOC | MLOC_7011.1 | 1666 | 3e-21 | 470 - 529 | 97 | 58 / 60 | minus | ABC05897 |
| JLOC1 | JLOC1_39068.2 | 876 | 8e-25 | 623 - 682 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39068.1 | 1446 | 8e-25 | 1193 - 1252 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_4617.4 | 1315 | 2e-21 | 651 - 710 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_4617.2 | 1812 | 2e-21 | 1148 - 1207 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC05901 | 942 | 3e-25 | 840 - 899 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05897 | 1175 | 6e-22 | 605 - 664 | 97 | 58 / 60 | plus | ABC05897 |
| Harvest35 | U35_2535 | 942 | 3e-25 | 840 - 899 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2532 | 1175 | 6e-22 | 605 - 664 | 97 | 58 / 60 | plus |
Contig Sequence (942 bp)
>U35_2535 942 Hv_44K_v2 CATCTCCTTCCCCATGCCCCGCCCAGCCATCTCCTTCCCGATTCCAAACATAAATGCAAA CCCTAGCGCCGCCTTGCGCGGCGGCTACCTTCACTACCCGCAGGATCTCCGATACCTCAT ACCCTCCTCAGTCAACTCCTACAGGCGAAACCTGAACCTGAGTGTTAACCTCAGAGCTGC CTTGGGCCGCCTGCAGGATCGCCAGTCTCCCATGGCCAGCTCAGGCAACTCCATCCACAC ACTGAACCCAAACACAAACCTGTACCTGAGGGCCAACCCCAACGCCGCCCCGCACGGCAA CTACCTTCAGAACATGCAGGATATTCGACATCCCATGCCCCGCCCAGTAATATCCTCTGC CATGCCAAACCGGAGCGACAATCTCTGCACTGCCTCAGGTGCCAAAACCGAACATAATAA AGGAGCACCGAGCGGAAGGCAGAACAATTCTAATGAAGTCGTTCACGTTTCTGATTCTGA TTCTGATTCTGATGATTTTTTCGAAGAAGAGGCTCCCCCCACACACTCCAAGTCAAATGG GAAAGCTTCATCTAATAGCCTAAAAGCTGGTGGAAAGGCTTCATCCTTTTCTAATGGAGA AGGTAGCAAAGGAGGGAAGGCATTTAGTCCTGGGAAAGGTGGGAAGGGCTCCACATCAAA TGCAAAGCCTGCAATATCTGATGCAGAACTAAAGCTTCAGCTTGATATGTCTCCAAATTC GAGATTGTTAACGAACTGTGAAGCAGCAGAAATGTTGCAGAAAATTCACGAACATATGGC TATCTTATCAGAGGATCCGAAGATAAAAATTCCCGAGTCGTTTGACAAGGCCTTTCAATA TGCAAAAGAAGAAAATCACTTCACCTCTGCGAAGTTGGTGAAAGAAATCCTGGAACCCCT TAAAGACTATGGTGTTAATGATGGCGAGATATGCATGATAGC
Homology of Contig U35_2535 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g49150.3 | 232 | 2e-61 | protein|RNA polymerase Rpb4, putative, expressed |
| Brachypodium v1_2 | Bradi3g56497.1 | 241 | 3e-75 | |
| Arabidopsis v10 | None |