barSeed - Barley Seed Development Database

Probe CUST_308_PI415269222

Source Contig TA41764_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_308_PI415269222	Hv_44K_v2	GCAAGATTTATTACCAAGTTCAGGCAGTGGACACATAGGTGTTGTGTTTATATTGCTAGT	998	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371482	1771	7e-23	1021 - 1081	98	60 / 61	plus	ABC07101
MLOC	MLOC_38828.2	1180	7e-23	529 - 589	98	60 / 61	plus	ABC07101
MLOC	MLOC_38828.1	1218	7e-23	452 - 512	98	60 / 61	plus	ABC07101
JLOC1	JLOC1_25277.2	1112	4e-23	342 - 402	98	60 / 61	plus
JLOC1	JLOC1_25277.1	1277	4e-23	425 - 485	98	60 / 61	plus
Harvest21	ABC07101	1818	1e-23	975 - 1035	98	60 / 61	plus	ABC07101
Harvest35	U35_17220	1818	1e-23	975 - 1035	98	60 / 61	plus

Contig Sequence (1058 bp)

>TA41764_4513 1058 Hv_44K_v2
TTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGCCGCCGGNAAGGAGACGAACACCA
AAACCCTCACCTGACCCTCCCCGTCAACCTCACCCGCCGCCGCCGCCGCCGCCGGAGGAG
GAGGAGGAGGAGGAGGAGATGGACTTCCAGGTCGTCGTCCTCGCCGGAGGCACTTCCGAG
AAGCTCTCGCCCCTCGTCTCCAAGGACGTTCCCAAGGCCCTCCTCCCCGTCGCCAACCGC
CCCGCGATCTCCTACGTGCTCGATCTCCTGGAGTCCAGCGACCTCAAGGACATCATCGTG
GTGGTGGAGGGGCAAGAGGCGGCCCGCCTCGTCGGAGCGTGGATCTCTAGTGCCTACCTT
GACCGCCTCGTCGTGGAGGTAGTTGCAGTTACCGAGGACATTGGAACTGCTGGTGCATTA
CGAGCTATTTCGAAGAGACTGGTCGCAAATGATGTTTTGGTGATTAGCGGCGACCTAGTA
ACTGATGTACTTCCTGGGGCTGTTGCTGCTACCCATAGAAGAAATGGTGCAGCTGTTACT
GCTTTACTATGTTCTGTTCCTGTTAGTGGTCCTTCAGATGCTGCTTCTTCGGGAGGGAAA
GATAAGGCTAAAAAACCATGTCGACTGAACATAGTTGGGCTAGACATAACAAGACAATTC
TTGTTGCATGTTGTATCAGGAACTGATGTTGAAAAGGATGTTCGAGTTTATAAGAGAAAA
ATTCGAGCTGTAGGTCAGATGGAAATTCGAAGTGACCTGATGGATGCTCATCTTTATGCC
TTTAATAGGACAACATTGCAGGATGTACTGGAACAGAAAGAAACATACCGTAGCATCAGA
CTTGAAGTACTCCCATATTTAGTGAAGAGCCAATTGAGGTCAGCTCCATCAGGCGGTGAA
GGAACAATAGTTGATGAAACTGGGAATGCTGTAGTTCCACTCAGCAGTAATTTACAGTGC
TTGTCACAACATCGTGCAATTGCACCATCTGCTTTCAAGCAAGATTTATTACCAAGTTCA
GGCAGTGGACACATAGGTGTTGTGTTTATATTGCTAGT

Homology of Contig TA41764_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g23160.1	456	2e-167	protein\|bacterial transferase hexapeptide domain containing protein, expressed
Brachypodium v1_2	Bradi3g31760.1	453	3e-170
Arabidopsis v10	AT5G19485.1	456	2e-100	transferases;nucleotidyltransferases \| chr5:6573907-6576352 REVERSE LENGTH=456