barSeed - Barley Seed Development Database

Probe CUST_308_PI390587928

Source Contig U35_44000

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_308_PI390587928	Hv_44K_v2	AGTTTCCAAGCAAGAATAATGACCAAGGCCTGGCAAAGATTGACGAAGGGATGTATGCAT	351	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44779.1	4563	2e-24	2914 - 2973	100	60 / 60	plus	ABC35357
MLOC	MLOC_44779.2	4416	2e-24	2842 - 2901	100	60 / 60	plus	ABC35357
JLOC1	JLOC1_29043.1	4326	8e-25	2866 - 2925	100	60 / 60	plus
Harvest21	ABC41388	439	3e-25	352 - 411	100	60 / 60	plus
Harvest35	U35_44000	439	3e-25	352 - 411	100	60 / 60	plus

Contig Sequence (439 bp)

>U35_44000 439 Hv_44K_v2
AAAGTGCTAAGAAGCAGCTGGGAAGTGATGCTGCCATGGCACGTGGTGTCATTTGGGAGG
CTCCCAAGGCTGCGCTCCCTAATGATGTTAAGCATGATCCAGCTGTGCCATCGTCCACCA
GCACTGTTGGAGCTGTTGCAGATAGTGTATCTGCAGCTGCTAACTCAGAGAACAGAGATT
TTTTTGTCGATATCAATGACCGCTTCCCCCCTGACATCCTTTCCGATTTCTTTGCAAAGG
CGAAAGATGCAGCACAGTCATCAACTCCTTTTAATGATCCTATTCTTAGCTTGAACATGC
CAAACTATGAGCCTAAGAATTGGTCATTCTTCAGAAATCTTGCAAAGGATGAGTTTCCAA
GCAAGAATAATGACCAAGGCCTGGCAAAGATTGACGAAGGGATGTATGCATTCGCAGGAG
CAGATAATGATGCAATCAG

Homology of Contig U35_44000 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g00580.1	1110	7e-68
Arabidopsis v10	None