barSeed - Barley Seed Development Database

Probe CUST_3089_PI390587928

Source Contig U35_11606

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3089_PI390587928	Hv_44K_v2	ATCATTGCTGAGTACAACGAGCTACCCTACCGCAACATTTAAGAAGGGAACCACATCCTA	378	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.918	0.953	1.157	1.650	1.416	0.731
Raw	26.173	19.723	22.953	49.976	13.851	8.595

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360150	1591	2e-24	1343 - 1402	100	60 / 60	plus	ABC23306
MLOC	MLOC_21316.1	2079	2e-24	182 - 241	100	60 / 60	minus	None
MLOC	MLOC_21317.1	1527	2e-24	211 - 270	100	60 / 60	minus	ABC23306
JLOC1	JLOC1_14797.1	1358	8e-25	1245 - 1304	100	60 / 60	plus
Harvest21	ABC23935	611	3e-25	379 - 438	100	60 / 60	plus
Harvest35	U35_11606	611	3e-25	379 - 438	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_11606 611 Hv_44K_v2
TTTTTGAGCCACTTATTTTAGAACTGAGGGAGTATGCGTTACAGATGAAGATGGTTTCTT
TGTGTAGACTACAAATGTACAAAATATGAAAGTTGGGTTGCAATTCCACTACGTGTGATG
TTTTTTCATAGAAAGATACTATGGAAGTTCATAGAGTAATTTTGAGGGAGTTCAAACTGA
ACTGAAGAACACGTAGCTGATAATCTTGTTCTGGAGGACAGCTTGAGTGTTGGGGAAGCC
GCCGGCAACCGCGTCCTCAGCCGCCTCCACAGCATCAGGGAGCACATCGGTGACTCCCTC
TTCGCGCACTCAAATGAGCTTGTTGCAGTCTTCACCAGATTGGTCAACCTTGGAAATGGA
ATGCTGCAGTCCCACCAGATCATTGCTGAGTACAACGAGCTACCCTACCGCAACATTTAA
GAAGGGAACCACATCCTAGCTGTGGAGGAACCACCGAGTGACACGGTGAATGCTCCAGCT
CCACTCCGCGGGCGCAGTCCAGTGTCTCTACAGAGAAGTGGAAAGCAATCAGACTGAGTA
AGCAAAAAAATGTGTAGTGTTGCTATAACAGCCCGAAACTGATGTTCTAGAAGATTCTTC
TTTTATTTTAT

Homology of Contig U35_11606 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None