barSeed - Barley Seed Development Database

Probe CUST_30899_PI390587928

Source Contig U35_2540

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30899_PI390587928	Hv_44K_v2	ATCCCATGCACCCCTAACAAAGTAACAAGCCCTGTCAGTGAGCAAATGCATTGGAAAAAA	1016	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34992.2	4401	7e-23	1433 - 1493	98	60 / 61	plus	ABC07298
MLOC	MLOC_34992.1	2882	7e-23	1453 - 1513	98	60 / 61	plus	ABC07298
JLOC1	JLOC1_22611.1	2917	4e-23	1388 - 1448	98	60 / 61	minus
Harvest21	ABC07298	1136	3e-25	1017 - 1076	100	60 / 60	plus	ABC07298
Harvest35	U35_2540	1136	3e-25	1017 - 1076	100	60 / 60	plus

Contig Sequence (1136 bp)

>U35_2540 1136 Hv_44K_v2
AGGGCAACAGGTGCAGCCTTAGGATTAGCTAAGCTCCCTTCTGATTCTTCCCCCCAAGTT
TTTGCTCTTCTTTATCTCATGACCACGATGATCACAGCTAGCTCCGTAGTGAAAGCCAAC
CTTCCTTGCTCGTCAAGGATATCCTCCTGCTCAGACTTCTCATCTGGTCATTCGTGGCGC
CCATTAGAAGCTGCAAAACATTACCGGACGCATGGTGTGCGCTCACTGCGGATAACATGT
GCTGCCACTAAGACTGCGAAATCTCCAGCTGAAGAAGAATGGAAGATCAAACGGCAACTC
CTATTAGAGAAGCGGGTACGTAGTGTGGATGTGAAGGAAGCACTCCGCCTTCAAAATGAA
AATAACTTTGTAATTCTTGATGTCAGACCAGAAGCAGAGTTCAAACAGGCTCACCCACCT
GGTGCTGTTAATGTACAAATATACAGATTAATAAAGGAGTGGACAGCATGGGATATTGCA
AGGAGGGCAGCATTTGCTTTCTTTGGCATATTTGCAGGAACAGAAGAGAATCCTGAGTTC
ATAAAAAGCGTTGAAGAAAAACTTAATAAAGATTCAAAGATAATTGTAGCATGTTCAGCA
GGAGGAACAATGAAGCCAACACAGAATCTACCTGATGGGAAGCAATCAAGGTCTCTGATA
GCGGCATACCTGCTGGTCCTAAACGGCTACAAGAACGTGTTCCATCTGGATGGAGGGCTC
TACACATGGTTCAAGGCAGACCTGCCTTCTGAAGGAGAGGAAGATTGAGCAGGAAAGTAC
CTGTCAGTTATTAGTTGCTACTCCTACGCCATTGTCGTTGTTCATACAACTGCAGTTTGC
AATGAGTTGTACTTGTAATGATGCGCGTTACGGATGAAATTGTCCGCACTAGTTTTGAGA
AAAAATTCATATCCTTGACATCCAACTTTTTGCCGGTCGCTAGATTTCTCTCGGATGTCG
AACCTAGGCTCACTGTTGTTTGATTTGAGCTGCTGTTTTCTGCGAAATTCATGCGAATCC
CATGCACCCCTAACAAAGTAACAAGCCCTGTCAGTGAGCAAATGCATTGGAAAAAAAAAA
GTTCTTATAAATCTCAGTCCCAGAGTCTCACGGATGAAGAGGCAGATGCATCCAAC

Homology of Contig U35_2540 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36040.1	230	4e-115	protein\|rhodanese-like domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g35810.1	230	6e-124
Arabidopsis v10	AT4G27700.1	224	1e-84	Rhodanese/Cell cycle control phosphatase superfamily protein \| chr4:13826541-13827673 REVERSE LENGTH=224