barSeed - Barley Seed Development Database

Probe CUST_30897_PI390587928

Source Contig U35_2542

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30897_PI390587928	Hv_44K_v2	TTCCTTCAGAACACAGAGTGGTAACTGGACACGATTCTTGGACTGGAACTGCCAAACAAA	1992	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66040.1	3032	2e-24	2646 - 2705	100	60 / 60	minus	ABC06606
JLOC1	JLOC1_43505.2	2946	8e-25	2559 - 2618	100	60 / 60	minus
JLOC1	JLOC1_43505.1	3260	8e-25	2873 - 2932	100	60 / 60	minus
Harvest21	ABC06606	2359	3e-25	1993 - 2052	100	60 / 60	plus	ABC06606
Harvest21	ABC35108	465	6e-22	285 - 344	97	58 / 60	minus
Harvest35	U35_2542	2359	3e-25	1993 - 2052	100	60 / 60	plus

Contig Sequence (2359 bp)

>U35_2542 2359 Hv_44K_v2
GAGAGAGGGAGAGAAACAGAGGAGGCTCATGGCGATGGCGGCAGCGTTGATGGCGGGGGC
GCTCCGGCGGGGAAGAGCGGGCGTCGGCGGCGCGTCCGAGATGGCGCTGCGTAGGCTCGT
GAGCACACTGATCATAGCGGAGCACGAAGGCGGGCTCGTGAAGCCATCTTCCCTAAGCGC
GTTGGCGGCTGCCGAGGCCATCGCCAAAGAGAACAAGGTGTCTCTTCTTCTCGGTGGATC
CGGACCGACGCTGCACAAGGCTGCCCAGCATGCCGCGTCTAGCCACCCATTGGTCAATGA
GGTTCTTGTTGCGGATTCAGACGTGTTTGCGCATCCTTTAGCCGAGCCTTGGGCCGAGCT
GCTCCGCTCCGTGCAGCAGAAAGGTGGATACTCTCATGTGATAGCCTCGTCGACGTCGTT
CGGGAAGAATTTGCTTCCACGCGCCGCGGCTCTTCTAGATGTCTCCCCTGTCACGGACGT
CACTGCCATATCTGAACCATGGGTCTTTGTGAGGCCAATTTATGCTGGAAATGCACTCTG
CACTGTACGATATACCGGGGAGTCTCCTTGTATGATGAGTATTAGATCAACATCATTTTC
TCTAGCTACCGAGTCTATGTCAGAAACTAAAGTTGCGCCCATAACCCAGGTTGACCTCTC
TTTCCTCAGTGAAGCGAGCTCAAGGAAATCTTCATGGGTCAATCTTACATCCCAAGACAC
AGAACGGCCAGACCTGGCAAATGCACGTGTGGTAGTCACTGGAGGCAGAGGTTTGAAGAG
CGCCGAGAATTTCAAATTGTTGGAGCAGCTGGCAGAGAAACTTGGCGCAGCAGTGGGTGC
GACCAGAGCTGCCGTCGATGCAGGATATGTGCCGAATGAACTTCAAGTTGGGCAAACCGG
GAAGATTGTTGCGCCTGAGCTCTACATTGCTTTCGGAGTTTCAGGGGCGATACAACACTT
GGCGGGGATGAGAGATTCCAAGTACATTGTGGCGGTCAACAAAGACGCAGACGCCCCAAT
CTTTCAGGTCGCAGATTACGGGATCGTTGGCGATCTGTTCCAAGTCCTCGAGGAGCTCCT
GGAGAAGATCCCAGACAAGAAATAAGTGTCCAGCTCGTGTCAATCATCTATCATGTTCCT
TGTCAATGCACGGAAGGGCTTTGGTCGAAATATGTCATTGTTGTATGGTTGGCTGGTCAA
TAAGCACCTTGCTGGGATAGGGGTGCAAGCAGCATAATCGGAGGAATGTGTTGACAGTTG
ACATTTTCAAAAACTCATCTCCCCACTTTGTACATATACATGCACCAGAGTATTGACTGC
ATGCCCAGAGATGAAGGGGAATTTGAATTTATGATGCAGAGAATAATAATGAAGTGGTTA
ATCCAGCTATTCCAACTGGTTCAACATTTGACTCACTACAAGAGCCTTGTTATTTCTACA
AATTTTACTTGTGGGAACCTGGCTCCAGAATCAGGTCAGGACGACTTACTGTCAAAGAAC
TGTTGGGAGACACTTTTCTTGCTGTCGACAAATGTGAATAATGTGAGAATCACGTATACA
CAAAACATACTCCCACCATAAACTAATACTGTATTAGTTTACGGAAGGAGTACAAGAGAA
TAATGTGAGCCTAGGAAAAGTGTAGAGTACAAGAGAATAATGTGAGCCTAGGAAAAGTGT
AGAGTTTTTTGGGGTCAACACAAAGTGTTCTGTTCGATTCACAAAGAGGACACTTGAGAA
TATGTGTTGTAAGATCAATAAACAGGGAGCAGCCGACAATGACACCACTAAGACAATATA
ACTATTGAGAGAGGAGATCTTCAACCATGAATTCAGTATCACCAAAAGGTAGAAACAAAA
TTAAGACAATGCAAGATGCATCTATCCTACCAAATAGATAGAAAGTTAAGCCACTCATGA
TGATGACTAGTAGATAGATGAAAACAAGCAAGAATTACATTGCAAGCACAAAATTGTTAT
TCACATGCCTAGTTCCTTCAGAACACAGAGTGGTAACTGGACACGATTCTTGGACTGGAA
CTGCCAAACAAAGGTGAGTAGGTCGCTCTTACATCACCGCCCGCTCCTCCAGGGTGATAT
TCTGCATCAGCCCAAAGGCACCGGTACCGGTCTTGGCCGGTTTCCCCAGTGACACGGTTG
CCGAAGGGCCGGTGAGGTTGTCCACCTCCCCGTGGTAGGCAGCCTCCATGATGAACCTCG
TGGCCTGCTCGAAGCTCATCTTGCCAAACGGTGACGTGCAGAACCGGGACATCCCGAGGC
TGTTCATCGGTCGGTAGGAGCCTCCCGAGGTCATGAAATCCGCGGCCAGGCTCAGATGCC
TCGGGTCTACCTTGATGCC

Homology of Contig U35_2542 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g61920.1	359	4e-177	protein\|electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g02630.1	361	0.0
Arabidopsis v10	AT1G50940.1	363	1e-134	\| Symbols: ETFALPHA \| electron transfer flavoprotein alpha \| chr1:18878038-18879939 REVERSE LENGTH=363