barSeed - Barley Seed Development Database

Probe CUST_30896_PI390587928

Source Contig U35_2543

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30896_PI390587928	Hv_44K_v2	TCAGTGAAGCGAGCTCAAGGAAATCTTCATGGGTCAATCTTACATCCCAAGACACAGAAC	510	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251444.1	1454	2e-24	706 - 765	100	60 / 60	plus	ABC06606
Harvest21	ABC06606	2359	3e-25	666 - 725	100	60 / 60	plus	ABC06606
Harvest35	U35_2543	605	3e-25	511 - 570	100	60 / 60	plus
Harvest35	U35_2542	2359	3e-25	666 - 725	100	60 / 60	plus

Contig Sequence (605 bp)

>U35_2543 605 Hv_44K_v2
GGCTCCGGCGGGGAAGAGCGGGCGTCGGCGGCGCATCCGAGATGGCGCTGCGTAGGCTCG
TGAGCACACTGATCATAGCGGAGCACGAAGGCGGGCTCGTGAAGCCATCTTCCCTAAGCG
CGTCTAGCCACCCATTGGTCAATGAGGTTCTTGTTGCGGATTCAGACGTGTTTGCGCATC
CTTTAGCCGAGCCTTGGGCCGAGCTGCTCCGCTCCGTGCAGCAGAAAGGTGGATACTCTC
ATGTGATAGCCTCGTCGACGTCGTTCGGGAAGAATTTGCTTCCACGCGCCGCGGCTCTTC
TAGATGTCTCCCCTGTCACGGACGTCACTGCCATATCTGAACCATGGGTCTTTGTGAGGC
CAATTTATGCTGGAAATGCACTCTGCACTGTACGATATACCGGGGAGTCTCCTTGTATGA
TGAGTATTAGATCAACATCATTTTCTCTAGCTACCGAGTCTATGTCAGAAACTAAAGTTG
CGCCCATAACCCAGGTTGACCTCTCTTTCCTCAGTGAAGCGAGCTCAAGGAAATCTTCAT
GGGTCAATCTTACATCCCAAGACACAGAACGGCCAGACCTGGCAAATGCACGTGTGGTAG
TCACT

Homology of Contig U35_2543 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g61920.1	359	2e-105	protein\|electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g02630.1	361	6e-115
Arabidopsis v10	AT1G50940.1	363	1e-66	\| Symbols: ETFALPHA \| electron transfer flavoprotein alpha \| chr1:18878038-18879939 REVERSE LENGTH=363