barSeed - Barley Seed Development Database

Probe CUST_30883_PI390587928

Source Contig U35_2557

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30883_PI390587928	Hv_44K_v2	TGTACTTTCCACCTTTACAACTTTGAAATTTCTAGCGTGGTAAAAACTGACGTGTCTAAA	1772	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.667	1.590	1.075	0.869	0.337	0.357
Raw	166.156	247.643	146.000	186.785	25.308	29.232

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12765.1	1161	2e-21	1056 - 1115	97	58 / 60	plus
Harvest35	U35_2557	1832	3e-25	1773 - 1832	100	60 / 60	plus

Contig Sequence (1832 bp)

>U35_2557 1832 Hv_44K_v2
GCAGAACAGAACAGAATCCCGTCCCGTCCACCATCCTAGTCCTACTCCTAGGAGAGGCCG
CATTCCCTTCCCTTCCCTTCCCCCTCCTCCCACCTCGTCGCCCTCGCAGATCCCCCACAC
CCCCCTCCCGCGAATGGCGTCCCGTCTCGCGTCCCGCCTCCTCCTCCGCCGCCCCGCTGC
CGTATTAAGTCTCCTCCAGAGTTCCAGACATGCTAGACATTTCAGCACTCAGCTACTTGA
AGGTGCTCCAAGACTTCCAAAACCAACATGTGAACGCTATTTCCTTCGAAATGCTTCTCC
TTATCAAATTTGGAGTAGATCATTTGCTTCAGAGAATGGTGACTTGGTTGAAGCTGTTGT
GCCCTTTATGGGTGAATCTGTAACTGATGGAACCCTTGCCAATTTCTTAAAGAAACCTGG
TGATAGGGTTGAAGCAGACGAGGCGATAGCTCAGATTGAAACTGATAAGGTTACAATAGA
TGTTTCCAGTCCAGAAGCTGGGGTAATTGAAAAGTTCATTGCCAGTGAAGGTGACACTGT
TACTCCAGGTACCAAAATTGCTGTGATATCTAAGTCTGCTGCTCCAAGTGAGGCCCATGT
TGCACCATCCGAAGAGACCTCCCAGAAGGAGACCCCTCCACCACCTCCTCCAGAGAAACC
TAAGGTCGAGCAAAAATCACCAAAAGTAGAATCTGTGAAAACACAGGCATCAAAACTAGC
CTCCCCCTCGGAACCTCAGCTCCCTCCAAAGGAAAGAGAGAGACGGGTGTCAATGCCAAG
GCTTAGGAAGCGCATTGCAAATCGTTTGAAGGATTCTCAGAACACTTTCGCACTACTGAC
TACATTCAATGAAGTTGACATGACCAATTTGATGAAGCTGCGGACTGACTACAAAGATGA
GTTTGTTAAGAAGCATGGTGTCAAATTGGGTCTGATGTCCTGCTTTGTTAAGGCTGCTGT
TTCTGCGCTTCAAAATCAGCCAATTGTCAATGCTGTTATTGATGGCGATGACATCATCTA
CAGAGACTACATTGACGTTAGTGTTGCTGTTGGCACTTCCAAGGGTCTTGTGGTGCCTGT
TATCCGTGATACAGAAGGAATGAACTTCGCGGACATTGAGAAGGGGATAAACAGCCTTGC
AAAGAAGGCAACTGAGGGGGCATTGTCAATTGATGAGATGGCAGGGGGAACCTTTACAAT
CTCAAACGGCGGTGTCTATGGAAGTCTTATCAGCACACCTATCATCAACCCTCCTCAGTC
AGCAATTCTTGGAATGCATTCTATTGTCCAACGCCCCGTGGTTGTGGATGGTGACATCCT
TGCGAGGCCAATGATGTACCTTGCACTGACATATGACCATAGGCTGATAGACGGCAGAGA
AGCTGTCCTGTTTCTGCGCCGTATCAAGGACGTGGTTGAGGACCCACGGAGGTTGCTCCT
TGACATATAGTTCCATTTGTCACTTCTGGGCTAAAGATTGTTTCTCGTCGATTTCGGAAT
AATTGTACACAAAATTTTGACTCATGCCGTAGTCGCTTCTCCAACAATTGAGAATTCGGT
TGCTGGCCTCTGAATTGTAGAAGAAACATCAACGAATTCGTTTCCCTTTTCTGAGGTGAT
ACTTGTTGGGACGTACTAGTTTCCCAAACATATTGTGATTTACAATAGCAAATGGACACC
CTCCTCAACTTTGTTGTGCCATTCAACGTGATAATAATTGTAACACGTGACGTCTGGTTG
GTATCAGGCAGGTGCTCGATTTTCAGTTCCAATGTACTTTCCACCTTTACAACTTTGAAA
TTTCTAGCGTGGTAAAAACTGACGTGTCTAAA

Homology of Contig U35_2557 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g32330.1	441	0.0	protein\|dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g14410.1	439	0.0
Arabidopsis v10	AT5G55070.1	464	5e-170	Dihydrolipoamide succinyltransferase \| chr5:22347637-22350409 FORWARD LENGTH=464