barSeed - Barley Seed Development Database

Probe CUST_30875_PI390587928

Source Contig U35_966

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30875_PI390587928	Hv_44K_v2	TGATGTCGCGGACAGAATCGTTTGGTTGGAGCGAACATATTAACGTTTTATCATAAAAAA	1200	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.250	1.391	1.272	0.864	0.301	0.263
Raw	16017.200	27874.893	22289.567	23755.113	2918.993	2778.667

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_22429.1	1421	3e-24	1228 - 1286	100	59 / 59	plus
Harvest21	ABC04789	1236	1e-24	1138 - 1196	100	59 / 59	plus	ABC04789
Harvest35	U35_966	1306	3e-25	1201 - 1260	100	60 / 60	plus
Harvest35	U35_33198	669	8e-21	618 - 669	100	52 / 52	plus

Contig Sequence (1306 bp)

>U35_966 1306 Hv_44K_v2
TCGAGCACTAGCATCGAGTCGGCCTTGTGACTCCTCTTCCCGTCTCGATCTCTTGCACAA
CAAGAAGAGACCGCCGCACCCCCACAAAAGAGGAAGAGGAACCACAGCTCTCGCCGCCCC
GAACCCTACGAGCAGCTCCGACGATGTTCCGCAACCAGTACGACACCGATGTCACCACCT
GGAGCCCGCAGGGGCGGCTGTTCCAGGTGGAGTATGCCATGGAGGCGGTGAAGCAGGGCT
CGGCCTGCGTCGGCCTCCGCTCCGCCACCCACGCCGTCCTCGCCGCCGCCAACAAGTCCG
CCAACGAGCTCTCCTCCCACCAGCGCAAGGTCTTCCGCGTCGCCGACCACGCCGGGGTCG
CGCTCGCCGGCCTCACCGCCGACGGCCGCGTCCTCTCCCGCTTCCTCCGCAACGAGTGCA
TCAACCACGCCTTCGTCTACGACGCGCCCCTCCCCGTCTCCAGGCTCGCGCTCCGCCTCG
CCGACAAGGCGCAGGTTTGCACACAGCGTTCATGGAAGAGGCCCTATGGGGTCGGCCTCC
TTGTTGCTGGTCTAGATGAGTCTGGAGCCCATCTCTACTACAACTGCCCCAGTGGGAACT
ACTTTGAGTACCAGGCATTCGCCATTGGCTCCCGCTCTCAGGCAGCCAAGACTTACCTCG
AACGCAGATTCGAGAAATTCAACGCCTACACCCCCGACGAGCTCATCAAGGACGCTCTCT
CAGCCATAAAGGAGACCCTCCAAGGTGAGAAGCTGACGAGCTCTAACTGCACCATTGCCA
TTGTCGGCAGAAGGGAGGATGGCACCGTTGAGCCTTTCTCCATGATCGACTCCAAGAGGA
TCCAGGAGATCATCGACTCCATGGAGGCTGCTGACGAGGCGCCAGCGGCCGATGCTCCGG
CTGAATCAAGCTCGATGCAGGAGGACAGGGGCGATGCTCCCCCAGCTGCGGATGCCCCTG
CAGCGGACGAGCCCGCAGCACCAGATGCCCCGGCACCGATGGACATCTAGGCGTCGTCTC
GTCTGATCGATACGTGTCATGTCTGTCCCACCCCCTTGTCCCAACACCATTCAGAGTTTC
CAAAAAGACTAGACTGTTGTTTTAGAAAGGTTGCCATCATTGTGTGTACTCTTTGCTTCT
GTGCCACTACAGCTTTGTGGTGCCTGCGTCTGGACAGATTGATTTTTATCTATCATGTGA
TGATGTCGCGGACAGAATCGTTTGGTTGGAGCGAACATATTAACGTTTTATCATAAAAAA
AAAAAAAAAAATGGTACCTTTTGGTGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_966 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g04100.1	271	7e-156	protein\|peptidase, T1 family, putative, expressed
Brachypodium v1_2	Bradi3g03040.1	284	2e-160
Arabidopsis v10	AT5G42790.1	278	1e-122	\| Symbols: PAF1, ATPSM30, ARS5 \| proteasome alpha subunit F1 \| chr5:17159270-17160975 REVERSE LENGTH=278