barSeed - Barley Seed Development Database

Probe CUST_30861_PI390587928

Source Contig U35_16818

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30861_PI390587928	Hv_44K_v2	CGGGTCGATATATTCTTTGACTCACTAACAGAGATAGCAGTTACACATAATTTATATAGC	1462	GeneList: lightyellow MasterList: Sugar_nucleotide_interconverters_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.091	0.311	1.126	1.965	1.239	1.279
Raw	579.987	3127.928	9904.107	26607.383	6014.210	6773.933

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251602.1	1541	2e-24	1409 - 1468	100	60 / 60	plus	ABC05788
MLOC	AK367723	1505	2e-24	1296 - 1355	100	60 / 60	plus	ABC05788
MLOC	MLOC_5738.2	1300	2e-24	1053 - 1112	100	60 / 60	plus	ABC05788
MLOC	MLOC_5738.1	1488	2e-24	1402 - 1461	100	60 / 60	plus	ABC05788
JLOC1	JLOC1_3707.1	1556	8e-25	1256 - 1315	100	60 / 60	plus
Harvest21	ABC05788	1508	3e-25	1365 - 1424	100	60 / 60	plus	ABC05788
Harvest35	U35_16818	1606	3e-25	1463 - 1522	100	60 / 60	plus

Contig Sequence (1606 bp)

>U35_16818 1606 Hv_44K_v2
GCCTTTCCGTTCCCACTCCCACGATTCACTCTGCCCCCTCCTTCCTCCCCCTGCCACGGT
CACAAAGCTCCTTCCTTTTTCCCGTGTCCGCCTTCCTCCACTCCCGCAATTCTTTCCCTG
TTCCGCTGCTGTAAAGGGCAGGGCGGAGCAGCCTGGAACAGGGTTGTTGGATCTGACTAT
CTGAGCCAGTGACCTCTCGCCGCCAGCCGCGGGCAGATGCTGCCGACCGGCAGGAGCAGG
CCGCAGCCCAGGCCTGCGCCGAGATCTTGGTCCTTCTCAGACATGGACTTCTCGGACCCG
AAGCGCAAGTCCAGGTACCTCAGCAAGATCATCATGGTGGCGCTCCTCACGGCCATGTGC
GTCGTCATGCTCACCCAGCCACCCTGCCACAGGAAGGCTCCCAGTGTGTTCTCTATCCAT
GAACTCGGAGTAACTCATGTGTTGGTGACGGGTGGCGCCGGCTACATAGGATCGCATGCG
GCTCTACGACTGCTCAATGACTCTTTCAGAGTCACCATTGTGGATAATCTCTCAAGAGGA
AATATCGGGGCGGTCAAGGTTCTTCAGAACTTGTTCCCTGATCCTGGGCGATTGCAGTTC
ATACATGCTGATCTAGGCGATGCAAAAGCTGTTAACAGAATATTCGCAGAAAATGCATTT
GATGCTGTCATGCACTTTGCTGCCGTTGCTTATGTGGGCGAGAGCACGCTTGAGCCTCTG
AGGTACTATCATAACATCACTGCAAATACTCTGGTCGTGCTAGAAGCCATGGCGATGCAC
AATGTTAAAACCCTGATCTACTCTAGCACATGTGCCACCTACGGGGAACCCGAGAAGATG
CCTATCACTGAAGAAACTCCCCAGTTTCCCATAAACCCGTATGGCAAGGCCAAGAAAATG
GCAGAGGATATCATTTTGGACTTCTCCAAGTCCAGGAAATCAGACATGTCAGTTATGATC
CTGAGATACTTCAACGTCATCGGTTCTGACCCAGAAGGAAGACTGGGTGAGGCTCCACCA
CCTGAATTGCGCGAGCATGGCCGTATATCTGGCGCATGCTTCGACGCAGCACTAGGAATA
ATCCCAGGTTTGAAGGTCAAAGGTACCGACTACGAAACTCCCGACGGGACTTGCGTGAGA
GATTACATCGATGTCACCGACCTGGTAGATGCCCACGTGAAAGCGCTCAACAAGGCGGAG
AGAGGCAAAGTTGGCATATACAATGTTGGCACCGGAAGAGGTAGGTCAGTGAAGGAGTTT
GTGGAAGCTTGCAAGAAGGCGACCGGAGTCGACATCAAGGTCCACTACTTCCCGCGCCGC
CCCGGTGACTATGCGGAAGTGTACAGCAACCCCGCAAGGATCAACCGCGAACTAAACTGG
ACAGCCCAGCACACCGAACTCCAGGAGAGCCTCAGGGTCGCGTGGACATGGCAGAAGAAG
CACCGGAGCGGCTATGCAGACTCGGGTCGATATATTCTTTGACTCACTAACAGAGATAGC
AGTTACACATAATTTATATAGCGTGTATGGTCATTTGTTCAAATCCTGAGATTTTATATT
TATATATGGGAGCTTCATCATTTCATTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_16818 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g04690.2	422	protein\|UDP-arabinose 4-epimerase 1, putative, expressed
Brachypodium v1_2	Bradi1g58080.1	422
Arabidopsis v10	AT1G30620.1	419	\| Symbols: HSR8, MUR4, UXE1 \| NAD(P)-binding Rossmann-fold superfamily protein \| chr1:10855496-10857970 FORWARD LENGTH=419