- Probe CUST_30853_PI390587928
- Source Contig U35_978
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30853_PI390587928 | Hv_44K_v2 | CGAAAAACATTCACTTGTCTCTCCTATTTAATATCAACACTGAAGGAGATCAGCTGTGCA | 320 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.783 | 2.013 | 1.157 | 0.760 | 0.237 | 0.348 |
| Raw | 215.399 | 393.988 | 189.660 | 205.906 | 21.270 | 34.457 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_50209.2 | 1451 | 8e-25 | 1383 - 1442 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50209.1 | 1213 | 8e-25 | 1145 - 1204 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC42432 | 396 | 6e-22 | 16 - 76 | 97 | 59 / 61 | minus | ABC42432 |
| Harvest35 | U35_978 | 397 | 3e-25 | 321 - 380 | 100 | 60 / 60 | plus |
Contig Sequence (397 bp)
>U35_978 397 Hv_44K_v2 AGGTGGCCAAGAAGCTGTGGGCGGCATCTTCAGCGCTGCTCCGGGAACTGCGGTTTAGAG AGTCTGAATTAAGGACTGGTTGAGCTAGCTTGTAAATTCGACATTGTTAGAGCATCTCTA GCAGTCCCTTCGGGGACATCTGATAAAATTGGAACGATACAGAGAGCATCTCTAGTAGAT CCCCTAAAAGTCATATTTGAGGGAAATTTTCGGGTTTCGGGGAATTAAGCCCTAGCGATC TGATTCAGAGGTACTCCCTCCGTCCGGGTTTAAAAGGCCCTTAGGCAAGGGCTGCACGTC CGTCATTTTTAGGCCGCTCTCGAAAAACATTCACTTGTCTCTCCTATTTAATATCAACAC TGAAGGAGATCAGCTGTGCAAAAAAAAAAAAAAAAAA
Homology of Contig U35_978 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |