barSeed - Barley Seed Development Database

Probe CUST_30849_PI390587928

Source Contig U35_16822

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30849_PI390587928	Hv_44K_v2	GGACAGCGGTAAACTGTTAATCTTTCGTCATAATTTTATTCTGTACAATTCTGATGCTGT	717	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51985.3	4974	2e-24	4896 - 4955	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.5	5200	2e-24	5106 - 5165	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.4	5181	2e-24	5080 - 5139	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.2	5022	2e-24	4925 - 4984	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.1	5522	2e-24	5425 - 5484	100	60 / 60	plus	ABC13136
JLOC1	JLOC1_33251.4	5186	8e-25	5085 - 5144	100	60 / 60	plus
JLOC1	JLOC1_33251.3	5260	8e-25	5159 - 5218	100	60 / 60	plus
JLOC1	JLOC1_33251.2	5380	8e-25	5279 - 5338	100	60 / 60	plus
JLOC1	JLOC1_33251.1	5092	8e-25	4991 - 5050	100	60 / 60	plus
Harvest35	U35_16822	799	3e-25	718 - 777	100	60 / 60	plus

Contig Sequence (799 bp)

>U35_16822 799 Hv_44K_v2
GCGAGTGGAAGAAGAAGGTCATCGAGCGGCTGTCCTCCGATGCGCAGCGGCTGAGGGACC
TCCAGTCCATCCTTCAGGAACTGAGGGCGAGCGTGGAGGCGTCGGGGGAGAGCGAGCTGG
AGAGCGTGAGGGCGCAGATGATCGAGTCCGAGGAGGCCATCACGCAGCTCATCGACGCCA
ACAGCAAGCTGCTGACCAAGGCCGAGGAGTTCACGTCGGCGGACGGGCTCGACGGCGGGA
GCGTGGACCTCCGGAGCCGGAGCCAGCGCAAGATCCTGGAGCGGGTGCGGAAGATGTCGG
AGAAGGTGGGCCGGCTGGAGATGGAGATGCAGAAGTTCCAGCAGGTCCTGCTGAAGCACG
AGGAGGAGCGTGCCAGCCGGCGTGCCGCCAAGACAGTGCAGCGGCGGTCAAGGGTGCAGC
TGGTGGAGTACCTCTACGGGAAGCGGCGCGGCGACAGCGGGTCCCGCCGGCCGAAGCGCG
GGCCCTCCTGTTGCATGAGGGCCAAGGCCATCGACGACTGACTGACGTCCCCAGTTTGTT
TATCCAGTGCTAGAGAGGCGCCAAGCTTTTTTTCTCTTACCTAGTTTTAATCTTCAGACA
ATGCAGCAGACTTTGCTCTTGTTTCATTTCATTGTGCTGCTCTAGGTAAATAATTATGTG
AACTGTCTATCCTAGTTTCTTCATTACCTCAAGTAAGGATGTAAATTGTAGTCGTCAGGA
CAGCGGTAAACTGTTAATCTTTCGTCATAATTTTATTCTGTACAATTCTGATGCTGTTTC
TCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16822 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41200.1	1592	4e-63	protein\|KIP1, putative, expressed
Brachypodium v1_2	Bradi4g02420.1	1546	7e-89
Arabidopsis v10	None