barSeed - Barley Seed Development Database

Probe CUST_30844_PI390587928

Source Contig U35_980

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30844_PI390587928	Hv_44K_v2	GGTCTGGGCTCTTATTGTTACGAACAGAGTAATGAATAAGGGTTGAAGTTTTCTGCAGTA	1101	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.219	1.378	1.256	1.020	0.480	0.482
Raw	95.033	172.319	132.867	166.282	27.423	29.635

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12905.1	1343	8e-25	1139 - 1198	100	60 / 60	plus
Harvest21	ABC02941	1161	3e-25	1102 - 1161	100	60 / 60	plus	ABC02941
Harvest35	U35_980	1161	3e-25	1102 - 1161	100	60 / 60	plus

Contig Sequence (1161 bp)

>U35_980 1161 Hv_44K_v2
CAGCTCCCCCCGCCCCCGTCCGGCACCTCTCTCTCGCTTCTTCCTCCGGCCCATGCGACG
GCAGTGACATCTTTGCCCGCCTGACCTTTCGATGGCCGCCGCCGCCACCGCCGCCGCCGC
GACCGGCACACTTCTTCCCCACGCACTATTGAATCACCGCTCGCCTCCGCCGCCGCAGCT
GCTCGCGCTGTCCTCCTCCTTCCGCCGCCTCTCCTTATCCGCCTCCCATCGCCGGACCAC
CCATTTAGTCGCCCACGCAGACGCCGGCACCGCAGAGCCGGAGCCCGTGGCCGAGCCTGC
TCCTGAGGGCGAGTCTGTCGTTGCCTCTGCTGACTCCGAGGAGGGGGAGGCGGAGGGGGC
CGTCGCATTGGCGGAGGACGAGGAGGAGCCGGCGCCGAGGCCCAAGCCTATTAAGTTCGG
CGAGATCATCGGGATTCTGAACAAGCAGTTCATCGAGGAGGCTGAGAAGGTGAAAGTACT
TCCGGATTTGAAGCCCGGTGACATCATCGAGCTTAGAATGCAACGTCCCAACAAGAGGAG
ATTGTCTCTCTTTAAGGGTATAATCATTGCAAAGCACAAATCTGGTGTTCACACCACGAT
CCGCGTCAGGAGGATTATTGCCGGTGTTGGAGTTGAAATTACATTCCCCATATACTCACC
AAGGATCAAGGAGATCAAAGTAATCAGACACAAGAAGGTGAGGAGGGCAAAGTTGTACTA
CCTGAAGTACAAGCTTCCCCGTTTCTCAACCTTCAAGTGAGATTAGACACGCTCCTCACA
CTAGCATATGTCGATTTCTCCTTGGCAAACGAGTTTCCACCATCTTGTTCAGATCTGTGC
ATCCACTGTAATGATCTCTGAACCTCGAGTCGCATAATTTTACATCTTTTTCCGATTTGC
GTATATCACGTCTTGCGTTGTGGAGTGTGTTTCATTCTGAGTGTGTAAAATTCCTAGCAG
CGCTCCGGTATGAACATGGTGATGTTTATGATTGTGCCCTTTCCTTGCTCCCAGCTACCT
ACCAGAGTCCCAACTCCCAACTGTTGGTTAACAGTACGTAACGCTGCTGTTAAGAAAGAA
GAACAGTTGTTATGAATAGTAGGTCTGGGCTCTTATTGTTACGAACAGAGTAATGAATAA
GGGTTGAAGTTTTCTGCAGTA

Homology of Contig U35_980 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43600.1	235	1e-72	protein\|50S ribosomal protein L19, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g50390.1	221	9e-81
Arabidopsis v10	None